# pdbTwoProteinFit

## Usage

    Usage: pdbTwoProteinFit
    Options:
        [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
        [-i[nput]res[idue]   InResidue           (NULL      )] :Optional  :ResidueInformationOfInputData
        [-i[nput]sel[ectResidue]SelectIn            (NULL      )] :Optional  :Output: Selected residue of in after fitting
        [-r[ef]              Ref                 (NULL      )] :Essential :ReferenceDataFile
        [-r[ef]res[idue]     RefResidue          (NULL      )] :Optional  :ResidueInfomationOfReferenceData
        [-r[ef]sel[ectResidue]SelectRef           (NULL      )] :Optional  :Output: Selected residue of after fitting
        [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
        [-o[utput]Matrix     Matrix              (stdout    )] :Optional  :OutputMatrix
        [-o[utput]Param      Param               (stdout    )] :Optional  :OutputParam
        [-o[utput]Dis[tance] outDis              (stdout    )] :Optional  :Output: PDB Distance as Temp
        [-o[utput]Dis[tance]2outDis2             (stdout    )] :Optional  :Output: Distance List for Ca
        [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         )] :Optional  :Mode
    >>>> Input and Reference File Format<<<<
    ResidueNumberToBeFitted
    ...
    If |, all residules are sellected till the residue in the next line