# pdb2mrc2d

## Usage

    Usage: pdb2mrc2d
    Options:
        [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
        [-o[utput]           Out                 (NULL      )] :Optional  :OutputDataFile(2D)
        [-O[utput]           Out3D               (NULL      )] :Optional  :OutputDataFile(3D)
        [-d[elta]            dx                  (5.0       )dy                  (5.0       )] :Essential :delta: dx[A] dy[A]
        [-s[tart]            sx                  (0.0       )sy                  (0.0       )] :Optional  :start: startx[A] starty[A]: When -s was not set, image centre is the origin(0,0,0)
        [-n[umber]           nx                  (0         )ny                  (0         )] :Essential :N:     nx ny (image size)
        [-Rot[ation]         rotnx               (1         )rotny               (1         )] :Optional  :rotnx rotny
        [-S[tart]            srotx               (0.0       )sroty               (0.0       )srotz               (0.0       )] :Optional  :start(rotx roty rotz):ZXY
        [-startE[uler]A[ngle]sRotMode            (YOYS      )sRot1               (0.0       )sRot2               (0.0       )sRot3               (0.0       )] :Optional  :EulerAngle: Start Angle
        [-E[uler]A[ngle]Mode RotMode             (YOYS      )] :Optional  :RotationMode
        [-E[uler]A[ngle]Rot1 dRot1               (5.0       )minRot1             (0.0       )maxRot1             (180.0     )] :Optional  :FirstRotation
        [-E[uler]A[ngle]Rot2 dRot2               (5.0       )minRot2             (0.0       )maxRot2             (180.0     )] :Optional  :SecondRotation
        [-w[eight]           Weight              (1.0       )] :Optional  :weight
        [-sig[ma]            Sigma               (0.0       )] :Optional  :Sigma[A]:Atom radius
        [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         )] :Optional  :Mode: 0 Merc; 1: Earth
    ----- Attention1 -----
    If both of -s and -startEA, first -s and second -startEA will be performed
    ----- Attention2 -----
    Bug fixed: rotation around x-axis. + is changed to -
    ----- Mode -----
    1: 0: equal angle 1: equal area
    2: 0: Mercatol    1: Morwide