# mrcSinogramFETreferredCorrelation

## Usage

    Usage: mrcSinogramFETreferredCorrelation
    Options:
        [-i[nput]            In                  (NULL      )] :Essential :InputFETDataFileList
        [-o[utput]           Out                 (NULL      )] :Essential :OutputEulerAngleDataFileList
        [-i[nput]Ref         InR                 (NULL      )] :Essential :InputReferenceFETDataFileList
        [-i[nput]Euler       InE                 (NULL      )] :Essential :InputEulerAngleDataFile
        [-n[ormalize]m[ode]  NM                  (0         )] :Optional  :normalizeMode
        [-o[utputList]m[ode] OM                  (2         )] :Optional  :outputListMode
        [-t[op]n[um]         TN                  (10        )] :Optional  :top number
        [-refR[ange]         RR                  (15        )] :Optional  :reference select Range
        [-w[eight]           WEIGHT              (NULL      )] :Optional  :CorrelationCalcWeight
        [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         )] :Optional  :Mode
    ----- Additional Usage -----

    Input EulerAngleDataFile example
    file1	YOYS	-30	60	0
    file2	YOYS	-53.24	10.000	0
    ...

    normalizeMode 0 : normalize with average and SD of whole inputfile
                      references and datas will be normalize independently
                  1 : for using normalized inputFETdata

    outputListMode 0 : output anglelist  only top1 angle set
                   1 :                   selected angle sets
                   2 :                   top -tn angle sets
       option -tn,-refR are for outputListMode!=0
        -tn   : number of referenceMaps be considerd in selection
        -refR : step size when generate referenceMapSet from 3D image is recommend