# pdbChargeFit

## Usage

    Usage: pdbChargeFit
    Options:
        [-i[nput]f[ixed pdb] InFix               (NULL      )] :Essential :InputFixedPdbFile
        [-i[nput]m[oved pdb] InMove              (NULL      )] :Essential :InputMovedPdbFile
        [-o[utput]           OutTxt              (NULL      )] :Essential :OutputTextFile
        [-s[ymmetry of helix(degree/A)]symmetry            (0.47096   )] :Optional  :default: 13/28
        [-zmin               zmin                (-28       )] :Optional  :minimum z
        [-zmax               zmax                (28        )] :Optional  :maximum z
        [-zDel[ta]           zDel                (1         )] :Optional  :delta z
        [-mind[istance]      mind                (1         )] :Optional  :set atoms distance to mind
        [-maxd[istance]      maxd                (5         )] :Optional  :ignore atoms distance
        [-a[xis coordinate]  axisX               (70        )axisY               (70        )] :Optional  :(x, y)
        [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         )] :Optional  :Mode
    ----- Algorythm -----
    score = Sum(1/SQR(length))
    , where length is the set of length between charged atoms