../ALPHALINUX5/mrcImageToNAMDConstantForces -h 
../ALPHALINUX5/mrcImageToNAMDConstantForces 
../ALPHALINUX5/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/ALPHALINUX5/mrcInfo -i 1atn.mrc3d 
/home/people/tacyas/Eos/bin/ALPHALINUX5/mrcInfo -i 1atn.mrc3d 
../ALPHALINUX5/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
../ALPHALINUX5/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 -w 0.01 
../ALPHALINUX5/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 -w 100 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -h 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/dos2unix -i 1atn.pdb -o 1atn2.pdb 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atn.mrc3d -ip 1atn.pdb -o 1atn.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcInfo -i 1atn.mrc3d 
/home/people/tacyas/Eos/bin/HP/mrcInfo -i 1atnH.mrc3d 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcInfo -i 1atnH.mrc3d 
/home/people/tacyas/Eos/bin/HP/mrcInfo -i 1atnH.mrc3d 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.pdb -o 1atnH.pdb2 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 1 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 1 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 1 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/HP/mrcImageToNAMDConstantForces -i .mrc3d -ip .output.pdb.coor -o .pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 1 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.5 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.25 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.125 
/home/people/tacyas/Eos/bin/I386LINUX/mrcImageToNAMDConstantForces -i 1atnH.mrc3d -ip 1atnH.output.pdb.coor -o 1atnH.pdb2.current -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -h 
../X86LINUX64/mrcImageToNAMDConstantForces 
../X86LINUX64/mrcImageToNAMDConstantForces -h 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coor -o data/1atnH.pdb2.current -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord -o data/1atnH.pdb2.currentNoWat -s 0.0625 
/home/people/tacyas/Eos/bin/X86LINUX64/pdbInfo -i data/1atnH.output.coor 
/home/people/tacyas/Eos/bin/X86LINUX64/pdbInfo -i data/1atnH.output.pdb.coor 
/home/people/tacyas/Eos/bin/X86LINUX64/pdbInfo -i data/1atnH.output.pdb.coord 
/home/people/tacyas/Eos/bin/X86LINUX64/pdbInfo -i data/1atnH.output.pdb.coord2 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.currentNoWat -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coor -o data/1atnH.pdb2.current -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2 -s 0.0625 
../X86LINUX64/mrcImageToNAMDConstantForces -i data/1atnH.mrc3d -ip data/1atnH.output.pdb.coord2 -o data/1atnH.pdb2.current2NoWat -s 0.0625 -nowat 
