Uses of Class
net.sf.jniinchi.JniInchiAtom

Uses of JniInchiAtom in net.sf.jniinchi

Fields in net.sf.jniinchi declared as JniInchiAtom

Modifier and Type	Field	Description
private JniInchiAtom	JniInchiBond.atomOrigin	Origin atom in bond.
private JniInchiAtom	JniInchiBond.atomTarget	Target atom in bond.
private JniInchiAtom	JniInchiStereo0D.centralAtom	Central atom.
private JniInchiAtom[]	JniInchiStereo0D.neighbors	Neighbouring atoms.

Fields in net.sf.jniinchi with type parameters of type JniInchiAtom

Modifier and Type	Field	Description
private List<JniInchiAtom>	JniInchiStructure.atomList	List of atoms.

Methods in net.sf.jniinchi that return JniInchiAtom

Modifier and Type	Method	Description
JniInchiAtom	JniInchiStructure.addAtom(JniInchiAtom atom)	Adds atom to inchi molecule.
JniInchiAtom	JniInchiStructure.getAtom(int i)	Returns atom from structure.
JniInchiAtom	JniInchiStereo0D.getCentralAtom()	Returns central atom of stereo parity.
JniInchiAtom	JniInchiStereo0D.getNeighbor(int i)
JniInchiAtom[]	JniInchiStereo0D.getNeighbors()	Returns neighboring atoms of stereo parity.
JniInchiAtom	JniInchiBond.getOriginAtom()	Returns atom at bond origin.
JniInchiAtom	JniInchiBond.getTargetAtom()	Returns atom at bond target.

Methods in net.sf.jniinchi with parameters of type JniInchiAtom

Modifier and Type	Method	Description
JniInchiAtom	JniInchiStructure.addAtom(JniInchiAtom atom)	Adds atom to inchi molecule.
void	JniInchiStructure.addAtoms(JniInchiAtom... atoms)	Convenience method to add multiple atoms to molecule.
static JniInchiStereo0D	JniInchiStereo0D.createNewDoublebondStereo0D(JniInchiAtom at0, JniInchiAtom at1, JniInchiAtom at2, JniInchiAtom at3, INCHI_PARITY parity)	Convenience method for generating 0D stereo parities at stereogenic double bonds.
static JniInchiStereo0D	JniInchiStereo0D.createNewTetrahedralStereo0D(JniInchiAtom atC, JniInchiAtom at0, JniInchiAtom at1, JniInchiAtom at2, JniInchiAtom at3, INCHI_PARITY parity)	Convenience method for generating 0D stereo parities at tetrahedral atom centres.
(package private) int	JniInchiStructure.getAtomIndex(JniInchiAtom atom)

Constructors in net.sf.jniinchi with parameters of type JniInchiAtom

Modifier	Constructor	Description
(package private)	JniInchiBond(JniInchiAtom atO, JniInchiAtom atT, int type, int stereo)
	JniInchiBond(JniInchiAtom atO, JniInchiAtom atT, INCHI_BOND_TYPE type)	Create bond.
	JniInchiBond(JniInchiAtom atO, JniInchiAtom atT, INCHI_BOND_TYPE type, INCHI_BOND_STEREO stereo)	Create bond.
(package private)	JniInchiStereo0D(JniInchiAtom atC, JniInchiAtom at0, JniInchiAtom at1, JniInchiAtom at2, JniInchiAtom at3, int type, int parity)
	JniInchiStereo0D(JniInchiAtom atC, JniInchiAtom at0, JniInchiAtom at1, JniInchiAtom at2, JniInchiAtom at3, INCHI_STEREOTYPE type, INCHI_PARITY parity)	Constructor.