Package nom.tam.fits

Class TableHDU<T extends AbstractTableData>

java.lang.Object

nom.tam.fits.BasicHDU<T>

nom.tam.fits.TableHDU<T>

All Implemented Interfaces:

FitsElement

Direct Known Subclasses:

AsciiTableHDU, BinaryTableHDU

public abstract class TableHDU<T extends AbstractTableData>
extends BasicHDU<T>

This class allows FITS binary and ASCII tables to be accessed via a common interface.

Field Summary

Fields

Modifier and Type	Field	Description
private static java.util.logging.Logger	LOG

Fields inherited from class nom.tam.fits.BasicHDU

BITPIX_BYTE, BITPIX_DOUBLE, BITPIX_FLOAT, BITPIX_INT, BITPIX_LONG, BITPIX_SHORT, isPrimary, myData, myHeader

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	TableHDU(Header hdr, T td)	Create the TableHDU.

Method Summary

Modifier and Type	Method	Description
int	addColumn(java.lang.Object newCol)	Add a column to the table without any associated header information.
int	addRow(java.lang.Object[] newRows)	Add a row to the end of the table.
protected abstract IFitsHeader[]	columnKeyStems()
void	deleteColumnsIndexOne(int column, int len)	Delete a set of columns from a table.
void	deleteColumnsIndexOne(int column, int len, java.lang.String[] fields)	Delete a set of columns from a table.
void	deleteColumnsIndexZero(int column, int len)	Delete a set of columns from a table.
void	deleteColumnsIndexZero(int column, int len, IFitsHeader[] fields)	Delete a set of columns from a table.
void	deleteRows(int row)	Remove all rows from the table starting at some specific index from the table.
void	deleteRows(int firstRow, int nRow)	Remove a number of adjacent rows from the table.
int	findColumn(java.lang.String colName)	Find the 0-based column index corresponding to a particular column name.
java.lang.Object	getColumn(int col)
java.lang.Object	getColumn(java.lang.String colName)
java.lang.String	getColumnFormat(int index)	Get the FITS type of a column in the table.
java.lang.String	getColumnMeta(int index, java.lang.String type)	Convenience method for getting column data.
java.lang.String	getColumnName(int index)	Get the name of a column in the table.
java.lang.Object[]	getColumns()
java.lang.Object	getElement(int row, int col)
int	getNCols()	Get the number of columns for this table
int	getNRows()	Get the number of rows for this table
java.lang.Object[]	getRow(int row)
void	setColumn(int col, java.lang.Object newCol)	Update a column within a table.
void	setColumn(java.lang.String colName, java.lang.Object newCol)	Update a column within a table.
void	setColumnMeta(int index, java.lang.String key, boolean value, java.lang.String comment, boolean after)
void	setColumnMeta(int index, java.lang.String key, double value, int precision, java.lang.String comment, boolean after)
void	setColumnMeta(int index, java.lang.String key, double value, java.lang.String comment, boolean after)
void	setColumnMeta(int index, java.lang.String key, long value, java.lang.String comment, boolean after)
void	setColumnMeta(int index, java.lang.String key, java.lang.String value, java.lang.String comment)
void	setColumnMeta(int index, java.lang.String key, java.lang.String value, java.lang.String comment, boolean after)	Deprecated. use setColumnMeta(int, IFitsHeader, String, String, boolean)
void	setColumnMeta(int index, IFitsHeader key, java.lang.String value, java.lang.String comment, boolean after)	Specify column metadata for a given column in a way that allows all of the column metadata for a given column to be organized together.
void	setColumnName(int index, java.lang.String name, java.lang.String comment)
void	setCurrentColumn(int col)	Set the cursor in the header to point after the metadata for the specified column
void	setCurrentColumn(int col, boolean after)	Set the cursor in the header to point either before the TFORM value or after the column metadat
void	setElement(int row, int col, java.lang.Object element)	Update a single element within the table.
void	setRow(int row, java.lang.Object[] newRow)	Update a row within a table.

Methods inherited from class nom.tam.fits.BasicHDU

addValue, addValue, addValue, addValue, addValue, addValue, addValue, addValue, canBePrimary, card, getAuthor, getAxes, getBitPix, getBlankValue, getBScale, getBUnit, getBZero, getCreationDate, getData, getDummyHDU, getEpoch, getEquinox, getFileOffset, getGroupCount, getHeader, getInstrument, getKernel, getMaximumValue, getMinimumValue, getObject, getObservationDate, getObserver, getOrigin, getParameterCount, getReference, getSize, getTelescope, getTrimmedString, getTrimmedString, info, isData, isHeader, read, reset, rewrite, rewriteable, saveReplaceCard, setPrimaryHDU, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LOG

private static final java.util.logging.Logger LOG

Constructor Detail

TableHDU

protected TableHDU(Header hdr,
                   T td)

Create the TableHDU. Note that this will normally only be invoked by subclasses in the FITS package.

Parameters:

hdr - the header

td - The data for the table.

Method Detail

addColumn

public int addColumn(java.lang.Object newCol)
              throws FitsException

Add a column to the table without any associated header information.

Parameters:

newCol - the new column information. the newCol should be an Object[] where type of all of the constituents is identical. The length of data should match the other columns. Note: It is valid for data to be a 2 or higher dimensionality primitive array. In this case the column index is the first (in Java speak) index of the array. E.g., if called with int[30][20][10], the number of rows in the table should be 30 and this column will have elements which are 2-d integer arrays with TDIM = (10,20).

Returns:

the number of columns in the adapted table

Throws:

FitsException - if the operation failed

addRow

public int addRow(java.lang.Object[] newRows)
           throws FitsException

Add a row to the end of the table. If this is the first row, then this will add appropriate columns for each of the entries. The rows to add must be supplied as column based array of arrays.

Parameters:

newRows - rows to add to the table

Returns:

the number of rows in the adapted table

Throws:

FitsException - if the operation failed

columnKeyStems

protected abstract IFitsHeader[] columnKeyStems()

Returns:

the stems of the keywords that are associated with table columns. Users can supplement this with their own and call the appropriate deleteColumns fields.

deleteColumnsIndexOne

public void deleteColumnsIndexOne(int column,
                                  int len)
                           throws FitsException

Delete a set of columns from a table.

Parameters:

column - The one-indexed start column.

len - The number of columns to delete.

Throws:

FitsException - if the operation failed

deleteColumnsIndexOne

public void deleteColumnsIndexOne(int column,
                                  int len,
                                  java.lang.String[] fields)
                           throws FitsException

Delete a set of columns from a table.

Parameters:

column - The one-indexed start column.

len - The number of columns to delete.

fields - Stems for the header fields to be removed for the table.

Throws:

FitsException - if the operation failed

deleteColumnsIndexZero

public void deleteColumnsIndexZero(int column,
                                   int len)
                            throws FitsException

Delete a set of columns from a table.

Parameters:

column - The one-indexed start column.

len - The number of columns to delete.

Throws:

FitsException - if the operation failed

deleteColumnsIndexZero

public void deleteColumnsIndexZero(int column,
                                   int len,
                                   IFitsHeader[] fields)
                            throws FitsException

Delete a set of columns from a table.

Parameters:

column - The zero-indexed start column.

len - The number of columns to delete.

fields - Stems for the header fields to be removed for the table.

Throws:

FitsException - if the operation failed

deleteRows

public void deleteRows(int row)
                throws FitsException

Remove all rows from the table starting at some specific index from the table. Inspired by a routine by R. Mathar but re-implemented using the DataTable and changes to AsciiTable so that it can be done easily for both Binary and ASCII tables.

Parameters:

row - the (0-based) index of the first row to be deleted.

Throws:

FitsException - if an error occurs.

deleteRows

public void deleteRows(int firstRow,
                       int nRow)
                throws FitsException

Remove a number of adjacent rows from the table. This routine was inspired by code by R.Mathar but re-implemented using changes in the ColumnTable class abd AsciiTable so that we can do it for all FITS tables.

Parameters:

firstRow - the (0-based) index of the first row to be deleted. This is zero-based indexing: 0<=firstrow< number of rows.

nRow - the total number of rows to be deleted.

Throws:

FitsException - If an error occurs in the deletion.

findColumn

public int findColumn(java.lang.String colName)

Find the 0-based column index corresponding to a particular column name.

Parameters:

colName - the name of the column

Returns:

index of the column

getColumn

public java.lang.Object getColumn(int col)
                           throws FitsException

Parameters:

col - column index to get

Returns:

a specific column from the table using 0-based column indexing.

Throws:

FitsException - if the operation failed

getColumn

public java.lang.Object getColumn(java.lang.String colName)
                           throws FitsException

Parameters:

colName - The name of the column to be extracted.

Returns:

a specific column of the table where the column name is specified using the TTYPEn keywords in the header.

Throws:

FitsException - if the operation failed

getColumnFormat

public java.lang.String getColumnFormat(int index)
                                 throws FitsException

Get the FITS type of a column in the table.

Parameters:

index - The 0-based index of the column.

Returns:

The FITS type.

Throws:

FitsException - if an invalid index was requested.

getColumnMeta

public java.lang.String getColumnMeta(int index,
                                      java.lang.String type)

Convenience method for getting column data. Note that this works only for metadata that returns a string value. This is equivalent to getStringValue(type+index);

Parameters:

index - index of the colum

type - the key type to get

Returns:

meta data string value

getColumnName

public java.lang.String getColumnName(int index)

Get the name of a column in the table.

Parameters:

index - The 0-based column index.

Returns:

The column name.

getColumns

public java.lang.Object[] getColumns()
                              throws FitsException

Returns:

all of the columns of the table.

Throws:

FitsException - if the operation failed

getElement

public java.lang.Object getElement(int row,
                                   int col)
                            throws FitsException

Parameters:

row - the row index of the element

col - the column index of the element

Returns:

a specific element of the table using 0-based indices.

Throws:

FitsException - if the operation failed

getNCols

public int getNCols()

Get the number of columns for this table

Returns:

The number of columns in the table.

getNRows

public int getNRows()

Get the number of rows for this table

Returns:

The number of rows in the table.

getRow

public java.lang.Object[] getRow(int row)
                          throws FitsException

Parameters:

row - the index of the row to retreive

Returns:

a specific row of the table.

Throws:

FitsException - if the operation failed

setColumn

public void setColumn(int col,
                      java.lang.Object newCol)
               throws FitsException

Update a column within a table. The new column should have the same format ast the column being replaced.

Parameters:

col - index of the column to replace

newCol - the replacement column

Throws:

FitsException - if the operation failed

setColumn

public void setColumn(java.lang.String colName,
                      java.lang.Object newCol)
               throws FitsException

Update a column within a table. The new column should have the same format as the column being replaced.

Parameters:

colName - name of the column to replace

newCol - the replacement column

Throws:

FitsException - if the operation failed

setColumnMeta

public void setColumnMeta(int index,
                          IFitsHeader key,
                          java.lang.String value,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Specify column metadata for a given column in a way that allows all of the column metadata for a given column to be organized together.

Parameters:

index - The 0-based index of the column

key - The column key. I.e., the keyword will be key+(index+1)

value - The value to be placed in the header.

comment - The comment for the header

after - Should the header card be after the current column metadata block (true), or immediately before the TFORM card (false). @throws FitsException if the operation failed

Throws:

FitsException - if the header could not be updated

setColumnMeta

public void setColumnMeta(int index,
                          java.lang.String key,
                          boolean value,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Throws:

FitsException

setColumnMeta

public void setColumnMeta(int index,
                          java.lang.String key,
                          double value,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Throws:

FitsException

setColumnMeta

public void setColumnMeta(int index,
                          java.lang.String key,
                          double value,
                          int precision,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Throws:

FitsException

setColumnMeta

public void setColumnMeta(int index,
                          java.lang.String key,
                          long value,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Throws:

FitsException

setColumnMeta

public void setColumnMeta(int index,
                          java.lang.String key,
                          java.lang.String value,
                          java.lang.String comment)
                   throws FitsException

Throws:

FitsException

setColumnMeta

@Deprecated
public void setColumnMeta(int index,
                          java.lang.String key,
                          java.lang.String value,
                          java.lang.String comment,
                          boolean after)
                   throws FitsException

Deprecated.

use setColumnMeta(int, IFitsHeader, String, String, boolean)

Specify column metadata for a given column in a way that allows all of the column metadata for a given column to be organized together.

Parameters:

index - The 0-based index of the column

key - The column key. I.e., the keyword will be key+(index+1)

value - The value to be placed in the header.

comment - The comment for the header

after - Should the header card be after the current column metadata block (true), or immediately before the TFORM card (false). @throws FitsException if the operation failed

Throws:

FitsException - if the header could not be updated

setColumnName

public void setColumnName(int index,
                          java.lang.String name,
                          java.lang.String comment)
                   throws FitsException

Throws:

FitsException

setCurrentColumn

public void setCurrentColumn(int col)

Set the cursor in the header to point after the metadata for the specified column

Parameters:

col - The 0-based index of the column

setCurrentColumn

public void setCurrentColumn(int col,
                             boolean after)

Set the cursor in the header to point either before the TFORM value or after the column metadat

Parameters:

col - The 0-based index of the column

after - True if the cursor should be placed after the existing column metadata or false if the cursor is to be placed before the TFORM value. If no corresponding TFORM is found, the cursoe will be placed at the end of current header.

setElement

public void setElement(int row,
                       int col,
                       java.lang.Object element)
                throws FitsException

Update a single element within the table.

Parameters:

row - the row index

col - the column index

element - the replacement element

Throws:

FitsException - if the operation failed

setRow

public void setRow(int row,
                   java.lang.Object[] newRow)
            throws FitsException

Update a row within a table.

Parameters:

row - row index

newRow - the replacement row

Throws:

FitsException - if the operation failed