| Package | Description |
|---|---|
| neurord |
Stochastic diffusion segments of dendrits with spines.
|
| neurord.disc |
These are various ways of turning a morphology into a set of elements of constrained volume.
|
| neurord.examples.branch | |
| neurord.examples.ictest | |
| neurord.examples.morphsurf | |
| neurord.examples.morphtest | |
| neurord.examples.NOEPAC | |
| neurord.examples.plane | |
| neurord.examples.regions | |
| neurord.examples.restart | |
| neurord.examples.smoothvolume | |
| neurord.examples.volume | |
| neurord.geom |
Just some geometry - positions, vectors, translations and rotations.
|
| neurord.inter | |
| neurord.model |
These classes represent the model as it is stored in the input files.
|
| neurord.neuroml | |
| neurord.numeric | |
| neurord.numeric.chem |
Species and reactions
|
| neurord.numeric.grid |
SteppedStochasticCalc contains the particle number based calculation with fixed timesteps
where a number of diffusion events and reactions is generated for each reaction, volume and
volume-volume connection at each timestep.
|
| neurord.numeric.math |
Just some linear algebra.
|
| neurord.numeric.morph |
Representation of the morphology and discretized mesh for computational purposes.
|
| neurord.numeric.pool |
These are deterministic calculations for a single mixed pool.
|
| neurord.numeric.stochastic |
These are the functions for the innner loops of the calculation.
|
| neurord.phys | |
| neurord.reduce | |
| neurord.util |
Various utilities todo with file handling, string processing etc.
|
| neurord.xml |
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