neurord.numeric.grid

Class ResultWriterHDF5.Trial

java.lang.Object

neurord.numeric.grid.ResultWriterHDF5.Trial

Enclosing class:

ResultWriterHDF5

protected class ResultWriterHDF5.Trial
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected ncsa.hdf.object.h5.H5ScalarDS	event_statistics
protected ncsa.hdf.object.Group	events
protected List<IGridCalc.Happening>	events_cache
protected ncsa.hdf.object.h5.H5ScalarDS	events_event
protected ncsa.hdf.object.h5.H5ScalarDS	events_extent
protected ncsa.hdf.object.h5.H5ScalarDS	events_kind
protected ncsa.hdf.object.h5.H5ScalarDS	events_original
protected ncsa.hdf.object.h5.H5ScalarDS	events_time
protected ncsa.hdf.object.h5.H5ScalarDS	events_waited
protected ncsa.hdf.object.Group	group
protected List<ResultWriterHDF5.PopulationOutput>	populations
protected ncsa.hdf.object.Group	sim
protected ncsa.hdf.object.h5.H5ScalarDS	statistics_times

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	Trial(ncsa.hdf.object.Group group)

Method Summary

Modifier and Type	Method and Description
protected void	_writeGrid(VolumeGrid vgrid, double startTime, IGridCalc source)
protected void	_writeOutput(int i, double time, IGridCalc source)
protected void	close(IGridCalc source)
protected void	flushEvents(double time, boolean all)
protected void	initEvents()
protected void	initEventStatistics(boolean periodic, IGridCalc source, int expected)
protected boolean	initPopulation(int i, IGridCalc source)
protected void	writeEventData(ncsa.hdf.object.Group parent, IGridCalc source)
protected void	writeEvents(double time, IGridCalc source)
protected void	writeEventStatistics(double time, IGridCalc source)
protected void	writeOutputInfo(ncsa.hdf.object.Group parent)
protected void	writeOutputInfo(ncsa.hdf.object.Group parent, String identifier, int[] which, int[] elements)
protected void	writePopulation(int i, double time, IGridCalc source)
protected void	writeReactionData(ncsa.hdf.object.Group parent, IGridCalc source)
protected void	writeRegionLabels(ncsa.hdf.object.Group parent, IGridCalc source)
protected void	writeSimulationData(IGridCalc source)
protected void	writeStimulationData(ncsa.hdf.object.Group parent, IGridCalc source)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

group

protected final ncsa.hdf.object.Group group

sim

protected final ncsa.hdf.object.Group sim

populations

protected List<ResultWriterHDF5.PopulationOutput> populations

event_statistics

protected ncsa.hdf.object.h5.H5ScalarDS event_statistics

statistics_times

protected ncsa.hdf.object.h5.H5ScalarDS statistics_times

events

protected ncsa.hdf.object.Group events

events_cache

protected List<IGridCalc.Happening> events_cache

events_event

protected ncsa.hdf.object.h5.H5ScalarDS events_event

events_kind

protected ncsa.hdf.object.h5.H5ScalarDS events_kind

events_extent

protected ncsa.hdf.object.h5.H5ScalarDS events_extent

events_time

protected ncsa.hdf.object.h5.H5ScalarDS events_time

events_waited

protected ncsa.hdf.object.h5.H5ScalarDS events_waited

events_original

protected ncsa.hdf.object.h5.H5ScalarDS events_original

Constructor Detail

Trial

protected Trial(ncsa.hdf.object.Group group)
         throws Exception

Throws:

Exception

Method Detail

close

protected void close(IGridCalc source)
              throws Exception

Throws:

Exception

_writeGrid

protected void _writeGrid(VolumeGrid vgrid,
                          double startTime,
                          IGridCalc source)
                   throws Exception

Throws:

Exception

writeSimulationData

protected void writeSimulationData(IGridCalc source)
                            throws Exception

Throws:

Exception

writeRegionLabels

protected void writeRegionLabels(ncsa.hdf.object.Group parent,
                                 IGridCalc source)
                          throws Exception

Throws:

Exception

writeStimulationData

protected void writeStimulationData(ncsa.hdf.object.Group parent,
                                    IGridCalc source)
                             throws Exception

Throws:

Exception

writeReactionData

protected void writeReactionData(ncsa.hdf.object.Group parent,
                                 IGridCalc source)
                          throws Exception

Throws:

Exception

writeEventData

protected void writeEventData(ncsa.hdf.object.Group parent,
                              IGridCalc source)
                       throws Exception

Throws:

Exception

writeOutputInfo

protected void writeOutputInfo(ncsa.hdf.object.Group parent,
                               String identifier,
                               int[] which,
                               int[] elements)
                        throws Exception

Throws:

Exception

writeOutputInfo

protected void writeOutputInfo(ncsa.hdf.object.Group parent)
                        throws Exception

Throws:

Exception

_writeOutput

protected void _writeOutput(int i,
                            double time,
                            IGridCalc source)
                     throws Exception

Throws:

Exception

initPopulation

protected boolean initPopulation(int i,
                                 IGridCalc source)
                          throws Exception

Throws:

Exception

writePopulation

protected void writePopulation(int i,
                               double time,
                               IGridCalc source)
                        throws Exception

Throws:

Exception

initEventStatistics

protected void initEventStatistics(boolean periodic,
                                   IGridCalc source,
                                   int expected)
                            throws Exception

Throws:

Exception

writeEventStatistics

protected void writeEventStatistics(double time,
                                    IGridCalc source)
                             throws Exception

Throws:

Exception

initEvents

protected void initEvents()
                   throws Exception

Throws:

Exception

flushEvents

protected void flushEvents(double time,
                           boolean all)
                    throws Exception

Throws:

Exception

writeEvents

protected void writeEvents(double time,
                           IGridCalc source)
                    throws Exception

Throws:

Exception