Uses of Class
neurord.model.SDRun

Packages that use SDRun

Package	Description
neurord	Stochastic diffusion segments of dendrits with spines.
neurord.model	These classes represent the model as it is stored in the input files.
neurord.numeric
neurord.numeric.grid	SteppedStochasticCalc contains the particle number based calculation with fixed timesteps where a number of diffusion events and reactions is generated for each reaction, volume and volume-volume connection at each timestep.
neurord.numeric.pool	These are deterministic calculations for a single mixed pool.
neurord.reduce

Uses of SDRun in neurord

Methods in neurord with parameters of type SDRun

Modifier and Type	Method and Description
BaseCalc	SDCalcType.getCalc(int trial, SDRun sdr)

Constructors in neurord with parameters of type SDRun

Constructor and Description
SDCalc(SDRun sdr, File output)

Uses of SDRun in neurord.model

Methods in neurord.model that return SDRun

Modifier and Type	Method and Description
protected static SDRun	SDRun.deserialize(File filename, Long seed)
protected static SDRun	SDRun.deserialize(String xml, Long seed)
static SDRun	SDRun.loadFromFile(File model_file, File ic_file, int trial, double population_from_time)

Uses of SDRun in neurord.numeric

Fields in neurord.numeric declared as SDRun

Modifier and Type	Field and Description
protected SDRun	BaseCalc.sdRun

Methods in neurord.numeric that return SDRun

Modifier and Type	Method and Description
SDRun	BaseCalc.getSource()

Constructors in neurord.numeric with parameters of type SDRun

Constructor and Description
BaseCalc(int trial, SDRun sdRun)
StaticCalc(int trial, SDRun sdr)

Uses of SDRun in neurord.numeric.grid

Methods in neurord.numeric.grid that return SDRun

Modifier and Type	Method and Description
SDRun	IGridCalc.getSource()

Methods in neurord.numeric.grid with parameters of type SDRun

Modifier and Type	Method and Description
protected void	StochasticGridCalc.initPopulation(int[][] counts, SDRun sdrun)

Constructors in neurord.numeric.grid with parameters of type SDRun

Constructor and Description
AdaptiveGridCalc(int trial, SDRun sdm)
DeterministicGridCalc(int trial, SDRun sdm)
GridCalc(int trial, SDRun sdRun)
SteppedStochasticGridCalc(int trial, SDRun sdm)
StochasticGridCalc(int trial, SDRun sdm)

Uses of SDRun in neurord.numeric.pool

Constructors in neurord.numeric.pool with parameters of type SDRun

Constructor and Description
DeterministicPoolCalc(int trial, SDRun sdm)
ForwardEulerPoolCalc(int trial, SDRun sdm)
ForwardExponentialPoolCalc(int trial, SDRun sdm)
ImplicitEulerPoolCalc(int trial, SDRun sdm)
RungeKutta4PoolCalc(int trial, SDRun sdm)
SemiImplicitEulerPoolCalc(int trial, SDRun sdm)

Uses of SDRun in neurord.reduce

Constructors in neurord.reduce with parameters of type SDRun

Constructor and Description
Reducer(SDRun sdModel, SDState sdState)