jspecview.common

Class PeakData

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.ArrayList<Measurement>

jspecview.common.MeasurementData

jspecview.common.PeakData

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<Measurement>, java.util.Collection<Measurement>, java.util.List<Measurement>, java.util.RandomAccess, AnnotationData

public class PeakData
extends MeasurementData

a data structure for peak lists

Author:

Bob Hanson hansonr@stolaf.edu

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
PeakData(Annotation.AType type, JDXSpectrum spec)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String[]	getDataHeader()
void	getInfo(java.util.Map<java.lang.String,java.lang.Object> info)
java.lang.String[][]	getMeasurementListArray(java.lang.String units)
double[][]	getMeasurementListArrayReal(java.lang.String units)
double	getThresh()
void	setPeakList(Parameters p, java.text.DecimalFormat formatter, ScaleData view)

Methods inherited from class jspecview.common.MeasurementData

addSpecShift, checkParameters, getAType, getData, getKey, getMeasurements, getParameters, getSpectrum, getState, isVisible, setKey, setMeasurements, setState

Methods inherited from class java.util.ArrayList

add, add, addAll, addAll, clear, clone, contains, ensureCapacity, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode

Methods inherited from class java.util.AbstractCollection

containsAll, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

containsAll, equals, hashCode

Constructor Detail

PeakData

public PeakData(Annotation.AType type,
        JDXSpectrum spec)

Method Detail

getThresh

public double getThresh()

getDataHeader

public java.lang.String[] getDataHeader()

Overrides:

getDataHeader in class MeasurementData

getMeasurementListArray

public java.lang.String[][] getMeasurementListArray(java.lang.String units)

Overrides:

getMeasurementListArray in class MeasurementData

getMeasurementListArrayReal

public double[][] getMeasurementListArrayReal(java.lang.String units)

Overrides:

getMeasurementListArrayReal in class MeasurementData

getInfo

public void getInfo(java.util.Map<java.lang.String,java.lang.Object> info)

Overrides:

getInfo in class MeasurementData

setPeakList

public void setPeakList(Parameters p,
               java.text.DecimalFormat formatter,
               ScaleData view)