org.openscience.jmol.app.nbo

Class NBODialogRun

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

org.openscience.jmol.app.nbo.NBODialogConfig

org.openscience.jmol.app.nbo.NBODialogModel

org.openscience.jmol.app.nbo.NBODialogRun

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

Direct Known Subclasses:

NBODialogView

abstract class NBODialogRun
extends NBODialogModel

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JDialog

javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
private javax.swing.JComboBox<java.lang.String>	comboEditOps
private javax.swing.DefaultComboBoxModel<java.lang.String>	comboModel
(package private) java.lang.String	fileData
(package private) java.lang.String	fileData2
protected GaussianDialog	gau
private javax.swing.JButton	jbRun
private javax.swing.JButton	jbSave
protected javax.swing.DefaultListModel<java.lang.String>	listModel
protected javax.swing.JList<java.lang.String>	lstKeywords
(package private) java.lang.String	params
private java.lang.String	useExt

Fields inherited from class org.openscience.jmol.app.nbo.NBODialogModel

editBox, jbEdit, jbSym, jCheckAtomNum, jComboSave, jComboUse, jrFileIn, jrJmolIn, jrLineIn, jtJmolInput, jtLineInput, jtSelectAtoms, tfExtS, tfFolderS, tfNameS, usePath

Fields inherited from class org.openscience.jmol.app.nbo.NBODialogConfig

action, alterHelp, browse, chbHelp, clipHelp, dataPathLabel, DEFAULT_PARAMS, DIALOG_CONFIG, DIALOG_LIST, DIALOG_MODEL, DIALOG_RUN, DIALOG_SEARCH, DIALOG_VIEW, dialogMode, editPane2, Field, fileText, fuseHelp, go, haveService, helpBtn, helpConfig, helpModel, icon, inputFile, isJmolNBO, jmolAtomCount, jobStem, jpNboOutput, linkHelp, mainButtons, modelButton, module, mutateHelp, nboFont, nboPathButton, nboService, PANEL_CENTER, PANEL_MODEL_SELECT, PANEL_RIGHT, PANEL_RUN_FILE, PANEL_RUN_SELECT, PANEL_SEARCH_CENTER, PANEL_SEARCH_OUT, PANEL_SEARCH_SELECT, PANEL_STATUS, PANEL_TOP, PANEL_VIEW_SELECT, rebondHelp, reqInfo, runButton, saveHelp, searchButton, searchHelp, sep, serverPathLabel, showHelp, showWorkPathDone, statusLab, statusPanel, switchHelp, symHelp, tfExt, tfFolder, tfName, topPanel, twistHelp, unifyHelp, useHelp, viewButton, vwr, workingPath

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	NBODialogRun(javax.swing.JFrame f)

Method Summary

Modifier and Type	Method and Description
protected void	addList()
protected void	addParams(java.lang.String[] s)
protected void	buildRun(java.awt.Container p)
private java.lang.String	cleanParams(java.lang.String params)
protected void	editOpChanged()
protected void	essChanged()
protected void	getParams(java.io.File inputFile)
protected void	goRunClicked(java.lang.String keywords, java.io.File inputFile, java.lang.Runnable whenDone)
protected void	removeListParams(java.util.List<java.lang.String> list)
private void	removeStringParams(java.lang.String str)
private void	runJob(java.lang.String keywords, java.io.File inputFile, java.lang.String ess, java.lang.Runnable whenDone)
protected javax.swing.JPanel	runS()
protected void	showWorkpathDialogR(java.lang.String workingPath)

Methods inherited from class org.openscience.jmol.app.nbo.NBODialogModel

actionSelected, buildModel, clearSelected, clip, editModel, enableComps, getModel, getSymmetry, helpDialogM, loadModel, modelCmd, modelOut, nboResetV, notifyCallbackM, rawInputM, showSaveDialog, showWorkpathDialogM

Methods inherited from class org.openscience.jmol.app.nbo.NBODialogConfig

appendOutput, appendOutputWithCaret, appendToFile, buildConfig, buildTopPanel, centerDialog, checkJmolNBO, clearInputFile, clearOutput, connect, folderBox, getExt, getHelp, getJobStem, nboReset, newNBOFile, rawCmd, saveHistory, saveWorkHistory, setComponents, setComponents2, setInputFile, setPreferredSPanelSize, setVisible, showNBOPathDialog, showWorkpathDialogS, showWorkpathDialogV

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

useExt

private java.lang.String useExt

gau

protected GaussianDialog gau

listModel

protected javax.swing.DefaultListModel<java.lang.String> listModel

lstKeywords

protected javax.swing.JList<java.lang.String> lstKeywords

comboEditOps

private javax.swing.JComboBox<java.lang.String> comboEditOps

jbRun

private javax.swing.JButton jbRun

jbSave

private javax.swing.JButton jbSave

comboModel

private javax.swing.DefaultComboBoxModel<java.lang.String> comboModel

fileData

java.lang.String fileData

fileData2

java.lang.String fileData2

params

java.lang.String params

Constructor Detail

NBODialogRun

protected NBODialogRun(javax.swing.JFrame f)

Method Detail

buildRun

protected void buildRun(java.awt.Container p)

runS

protected javax.swing.JPanel runS()

essChanged

protected void essChanged()

editOpChanged

protected void editOpChanged()

showWorkpathDialogR

protected void showWorkpathDialogR(java.lang.String workingPath)

Specified by:

showWorkpathDialogR in class NBODialogConfig

getParams

protected void getParams(java.io.File inputFile)

cleanParams

private java.lang.String cleanParams(java.lang.String params)

addList

protected void addList()

addParams

protected void addParams(java.lang.String[] s)

removeListParams

protected void removeListParams(java.util.List<java.lang.String> list)

removeStringParams

private void removeStringParams(java.lang.String str)

goRunClicked

protected void goRunClicked(java.lang.String keywords,
                            java.io.File inputFile,
                            java.lang.Runnable whenDone)

Specified by:

goRunClicked in class NBODialogConfig

runJob

private void runJob(java.lang.String keywords,
                    java.io.File inputFile,
                    java.lang.String ess,
                    java.lang.Runnable whenDone)