org.jmol.shapespecial

Class Ellipsoids

java.lang.Object

org.jmol.shape.Shape

org.jmol.shapespecial.Ellipsoids

public class Ellipsoids
extends Shape

Field Summary

Fields

Modifier and Type	Field and Description
java.util.Map<Tensor,Ellipsoid>	atomEllipsoids
private javajs.util.Lst<Ellipsoid>	ellipsoidSet
private static java.lang.String	PROPERTY_MODES
private BS	selectedAtoms
java.util.Map<java.lang.String,Ellipsoid>	simpleEllipsoids
private java.lang.String	typeSelected

Fields inherited from class org.jmol.shape.Shape

bsColixSet, bsSizeSet, isBioShape, ms, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors

Constructor and Description
Ellipsoids()

Method Summary

Modifier and Type	Method and Description
private boolean	checkID(java.lang.String thisID)
int	getIndexFromName(java.lang.String thisID)
boolean	getPropertyData(java.lang.String property, java.lang.Object[] data)
java.lang.String	getShapeState()
private void	getStateAtoms(javajs.util.SB sb)
private void	getStateID(javajs.util.SB sb)
private boolean	initEllipsoids(java.lang.Object value)
void	initShape()
boolean	isActive()
void	setAtomClickability()
void	setModelVisibilityFlags(BS bsModels)
private void	setProp(Ellipsoid e, int mode, java.lang.Object value)
void	setProperty(java.lang.String propertyName, java.lang.Object value, BS bs)
protected void	setSize(int size, BS bsSelected)
private void	setVis(java.util.Map<?,Ellipsoid> ellipsoids, BS bs, Atom[] atoms)

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getProperty, getShapeDetail, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, merge, setModelSet, setPropS, setShapeSizeRD, setShapeVisibility, setSizeRD, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROPERTY_MODES

private static final java.lang.String PROPERTY_MODES

See Also:

Constant Field Values

simpleEllipsoids

public java.util.Map<java.lang.String,Ellipsoid> simpleEllipsoids

atomEllipsoids

public java.util.Map<Tensor,Ellipsoid> atomEllipsoids

typeSelected

private java.lang.String typeSelected

selectedAtoms

private BS selectedAtoms

ellipsoidSet

private javajs.util.Lst<Ellipsoid> ellipsoidSet

Constructor Detail

Ellipsoids

public Ellipsoids()

Method Detail

isActive

public boolean isActive()

getIndexFromName

public int getIndexFromName(java.lang.String thisID)

Overrides:

getIndexFromName in class Shape

Returns:

index

setSize

protected void setSize(int size,
                       BS bsSelected)

Overrides:

setSize in class Shape

getPropertyData

public boolean getPropertyData(java.lang.String property,
                               java.lang.Object[] data)

Overrides:

getPropertyData in class Shape

Returns:

true if serviced

checkID

private boolean checkID(java.lang.String thisID)

initEllipsoids

private boolean initEllipsoids(java.lang.Object value)

initShape

public void initShape()

Overrides:

initShape in class Shape

setProperty

public void setProperty(java.lang.String propertyName,
                        java.lang.Object value,
                        BS bs)

Specified by:

setProperty in class Shape

setProp

private void setProp(Ellipsoid e,
                     int mode,
                     java.lang.Object value)

getShapeState

public java.lang.String getShapeState()

Specified by:

getShapeState in class Shape

getStateID

private void getStateID(javajs.util.SB sb)

getStateAtoms

private void getStateAtoms(javajs.util.SB sb)

setModelVisibilityFlags

public void setModelVisibilityFlags(BS bsModels)

Overrides:

setModelVisibilityFlags in class Shape

setVis

private void setVis(java.util.Map<?,Ellipsoid> ellipsoids,
                    BS bs,
                    Atom[] atoms)

setAtomClickability

public void setAtomClickability()

Overrides:

setAtomClickability in class Shape