org.jmol.shape

Class Measures

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.AtomShape

org.jmol.shape.Measures

All Implemented Interfaces:

JmolMeasurementClient

public class Measures
extends AtomShape
implements JmolMeasurementClient

Field Summary

Fields

Modifier and Type	Field and Description
private BS	bsSelected
short	colix
(package private) TickInfo	defaultTickInfo
javajs.awt.Font	font3d
private java.util.Map<java.lang.String,java.lang.Integer>	htMin
private java.lang.Boolean	intramolecular
private boolean	measureAllModels
int	measurementCount
javajs.util.Lst<Measurement>	measurements
MeasurementPending	mPending
private boolean	mustBeConnected
private boolean	mustNotBeConnected
private RadiusData	radiusData
private java.lang.String	strFormat
(package private) TickInfo	tickInfo
private int	tokAction

Fields inherited from class org.jmol.shape.AtomShape

ac, atoms, bsSizeDefault, colixes, isActive, mad, mads, monomerCount, paletteIDs

Fields inherited from class org.jmol.shape.Shape

bsColixSet, bsSizeSet, isBioShape, ms, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors

Constructor and Description
Measures()

Method Summary

Modifier and Type	Method and Description
private void	clear()
private void	define(MeasurementData md, int tokAction)
private void	defineAll(int iPt, Measurement m, boolean isDelete, boolean isShow, boolean doSelect)
private void	defineMeasurement(int i, Measurement m, boolean doSelect)
private void	deleteI(int i)
private void	deleteM(Measurement m)
private void	deleteO(java.lang.Object value)
private void	doAction(MeasurementData md, java.lang.String s, int tok)
private int	find(Measurement m)
private javajs.util.Lst<java.util.Map<java.lang.String,java.lang.Object>>	getAllInfo()
private java.lang.String	getAllInfoAsString()
private java.util.Map<java.lang.String,java.lang.Object>	getInfo(int index)
java.lang.String	getInfoAsString(int index)
java.lang.Object	getProperty(java.lang.String property, int index)
java.lang.String	getShapeState()
protected void	initModelSet()
void	initShape()
void	processNextMeasure(Measurement m)
private void	reformatDistances()
private void	setColor(short colix)
private void	setFormats(java.lang.String format)
private void	setIndices()
void	setProperty(java.lang.String propertyName, java.lang.Object value, BS bsIgnored)
private Measurement	setSingleItem(javajs.util.Lst<java.lang.Object> vector)
protected void	setSize(int size, BS bsSelected)
void	setVisibilityInfo()
private void	showHide(boolean isHide)
private void	showHideM(Measurement m, boolean isHide)
private void	toggle(Measurement m)
private void	toggleOn(int[] indices)

Methods inherited from class org.jmol.shape.AtomShape

getMonomers, getSize, setAtomClickability, setColixAndPalette, setPropAS, setSize2, setSizeRD, setSizeRD2

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getPropertyData, getShapeDetail, getSizeG, getTranslucentLabel, initializeShape, merge, setModelSet, setModelVisibilityFlags, setPropS, setShapeSizeRD, setShapeVisibility, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bsSelected

private BS bsSelected

strFormat

private java.lang.String strFormat

mustBeConnected

private boolean mustBeConnected

mustNotBeConnected

private boolean mustNotBeConnected

radiusData

private RadiusData radiusData

intramolecular

private java.lang.Boolean intramolecular

measureAllModels

private boolean measureAllModels

measurementCount

public int measurementCount

measurements

public final javajs.util.Lst<Measurement> measurements

mPending

public MeasurementPending mPending

colix

public short colix

tickInfo

TickInfo tickInfo

defaultTickInfo

TickInfo defaultTickInfo

font3d

public javajs.awt.Font font3d

htMin

private java.util.Map<java.lang.String,java.lang.Integer> htMin

tokAction

private int tokAction

Constructor Detail

Measures

public Measures()

Method Detail

initModelSet

protected void initModelSet()

Overrides:

initModelSet in class AtomShape

initShape

public void initShape()

Overrides:

initShape in class Shape

setSize

protected void setSize(int size,
                       BS bsSelected)

Overrides:

setSize in class AtomShape

setProperty

public void setProperty(java.lang.String propertyName,
                        java.lang.Object value,
                        BS bsIgnored)

Specified by:

setProperty in class Shape

setSingleItem

private Measurement setSingleItem(javajs.util.Lst<java.lang.Object> vector)

getProperty

public java.lang.Object getProperty(java.lang.String property,
                                    int index)

Overrides:

getProperty in class Shape

Returns:

true if serviced

clear

private void clear()

setColor

private void setColor(short colix)

setFormats

private void setFormats(java.lang.String format)

showHide

private void showHide(boolean isHide)

showHideM

private void showHideM(Measurement m,
                       boolean isHide)

toggle

private void toggle(Measurement m)

toggleOn

private void toggleOn(int[] indices)

deleteM

private void deleteM(Measurement m)

deleteO

private void deleteO(java.lang.Object value)

defineAll

private void defineAll(int iPt,
                       Measurement m,
                       boolean isDelete,
                       boolean isShow,
                       boolean doSelect)

find

private int find(Measurement m)

setIndices

private void setIndices()

define

private void define(MeasurementData md,
                    int tokAction)

processNextMeasure

public void processNextMeasure(Measurement m)

Specified by:

processNextMeasure in interface JmolMeasurementClient

defineMeasurement

private void defineMeasurement(int i,
                               Measurement m,
                               boolean doSelect)

deleteI

private void deleteI(int i)

doAction

private void doAction(MeasurementData md,
                      java.lang.String s,
                      int tok)

reformatDistances

private void reformatDistances()

getAllInfo

private javajs.util.Lst<java.util.Map<java.lang.String,java.lang.Object>> getAllInfo()

getAllInfoAsString

private java.lang.String getAllInfoAsString()

getInfo

private java.util.Map<java.lang.String,java.lang.Object> getInfo(int index)

getInfoAsString

public java.lang.String getInfoAsString(int index)

Overrides:

getInfoAsString in class AtomShape

Returns:

script, but only for Measures

setVisibilityInfo

public void setVisibilityInfo()

getShapeState

public java.lang.String getShapeState()

Overrides:

getShapeState in class AtomShape