ScriptEval

java.lang.Object
- org.jmol.script.ScriptError
- - org.jmol.script.ScriptParam
  - - org.jmol.script.ScriptExpr
    - - org.jmol.script.ScriptEval

All Implemented Interfaces:

JmolScriptEvaluator
```
public class ScriptEval
extends ScriptExpr
```

Field Summary

Fields
Modifier and Type	Field and Description
`T[][]`	`aatoken`
`boolean`	`allowJSThreads`
`private JmolCmdExtension`	`cmdIso`
`int`	`commandHistoryLevelMax`
`ScriptCompiler`	`compiler`
`private java.lang.String`	`contextPath`
`private java.lang.Thread`	`currentThread`
`private boolean`	`debugScript`
`java.util.Map<java.lang.String,java.lang.Object>`	`definedAtomSets`
`private boolean`	`executing`
`private boolean`	`executionPaused`
`private boolean`	`executionStepping`
`private boolean`	`executionStopped`
`private JmolThread`	`fileLoadThread`
`private boolean`	`forceNoAddHydrogens`
`java.lang.String`	`fullCommand`
`java.lang.String`	`functionName`
`boolean`	`historyDisabled`
`private static int`	`iProcess`
`private boolean`	`isCmdLine_C_Option`
`private boolean`	`isCmdLine_c_or_C_Option`
`boolean`	`isJS`
`boolean`	`isStateScript`
`private int`	`lineEnd`
`private int[][]`	`lineIndices`
`private short[]`	`lineNumbers`
`private boolean`	`listCommands`
`private JmolMathExtension`	`mathExt`
`private boolean`	`mustResumeEval`
`javajs.util.SB`	`outputBuffer`
`private JmolParallelProcessor`	`parallelProcessor`
`protected int`	`pc`
`private int`	`pcEnd`
`private int`	`pcResume`
`private static java.lang.String`	`saveList`
`private java.lang.String`	`script`
`private JmolThread`	`scriptDelayThread`
`private java.lang.String`	`scriptExtensions`
`java.lang.String`	`scriptFileName`
`int`	`scriptLevel`
`private static int`	`scriptLevelMax`
`private int`	`scriptReportingLevel`
`ShapeManager`	`sm`
`private JmolSmilesExtension`	`smilesExt`
`java.lang.String`	`thisCommand`
`private long`	`timeBeginExecution`
`private long`	`timeEndExecution`
`boolean`	`tQuiet`

Fields inherited from class org.jmol.script.ScriptExpr
debugHigh, tempStatement

Fields inherited from class org.jmol.script.ScriptParam
contextVariables, coordinatesAreFractional, expressionResult, fractionalPoint, isBondSet, iToken, slen, st, theTok, theToken, thisContext

Fields inherited from class org.jmol.script.ScriptError
chk, error, ERROR_axisExpected, ERROR_backgroundModelError, ERROR_badArgumentCount, ERROR_badMillerIndices, ERROR_badRGBColor, ERROR_booleanExpected, ERROR_booleanOrNumberExpected, ERROR_booleanOrWhateverExpected, ERROR_cannotSet, ERROR_colorExpected, ERROR_colorOrPaletteRequired, ERROR_commandExpected, ERROR_coordinateOrNameOrExpressionRequired, ERROR_drawObjectNotDefined, ERROR_endOfStatementUnexpected, ERROR_expressionExpected, ERROR_expressionOrIntegerExpected, ERROR_filenameExpected, ERROR_fileNotFoundException, ERROR_incompatibleArguments, ERROR_insufficientArguments, ERROR_integerExpected, ERROR_integerOutOfRange, ERROR_invalidArgument, ERROR_invalidParameterOrder, ERROR_keywordExpected, ERROR_moCoefficients, ERROR_moIndex, ERROR_moModelError, ERROR_moOccupancy, ERROR_moOnlyOne, ERROR_multipleModelsDisplayedNotOK, ERROR_multipleModelsNotOK, ERROR_noData, ERROR_noPartialCharges, ERROR_noUnitCell, ERROR_numberExpected, ERROR_numberMustBe, ERROR_numberOutOfRange, ERROR_objectNameExpected, ERROR_planeExpected, ERROR_propertyNameExpected, ERROR_spaceGroupNotFound, ERROR_stringExpected, ERROR_stringOrIdentifierExpected, ERROR_tooManyPoints, ERROR_tooManyScriptLevels, ERROR_unrecognizedAtomProperty, ERROR_unrecognizedBondProperty, ERROR_unrecognizedCommand, ERROR_unrecognizedExpression, ERROR_unrecognizedObject, ERROR_unrecognizedParameter, ERROR_unrecognizedParameterWarning, ERROR_unrecognizedShowParameter, ERROR_what, ERROR_writeWhat, errorMessage, errorMessageUntranslated, errorType, iCommandError, ignoreError, vwr

Constructor Summary

Constructors
Constructor and Description

ScriptEval()

Constructors
Constructor and Description
`ScriptEval()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private void`	`addProcess(javajs.util.Lst<T[]> vProcess, int pc, int pt)`
`private void`	`breakAt(int pt)`
`private boolean`	`checkContinue()` checks to see if there is a pause condition, during which commands can still be issued, but with the ! first.
`private void`	`checkExtension(int tok)`
`private int`	`checkPacked(int i, java.util.Map<java.lang.String,java.lang.Object> htParams, javajs.util.SB sOptions)`
`ScriptContext`	`checkScriptSilent(java.lang.String script)` a method for just checking a script
`boolean`	`checkSelect(java.util.Map<java.lang.String,SV> h, T[] where)` Check a map for a WHERE phrase
`void`	`clearDefinedVariableAtomSets()`
`private void`	`clearState(boolean tQuiet)`
`private void`	`cmdAnimation()`
`private void`	`cmdAxes(int index)`
`private void`	`cmdBackground(int i)`
`private void`	`cmdBind()`
`private void`	`cmdBondorder()`
`private void`	`cmdBoundbox(int index)`
`private void`	`cmdCD()`
`private void`	`cmdCenter(int i)`
`private void`	`cmdColor()`
`private void`	`cmdDefine()`
`private void`	`cmdDelay()`
`private void`	`cmdDelete()`
`private void`	`cmdDisplay(boolean isDisplay)`
`private void`	`cmdDots(int iShape)`
`private void`	`cmdEcho(int index)`
`private void`	`cmdFile()`
`private void`	`cmdFixed()`
`private boolean`	`cmdFlow(int tok, boolean isForCheck, javajs.util.Lst<T[]> vProcess)`
`private int`	`cmdFlowSwitch(ContextToken c, int tok)`
`private void`	`cmdFont(int shapeType, float fontsize)`
`private void`	`cmdFrank(int i)`
`private void`	`cmdFunc()`
`private void`	`cmdGetProperty()`
`private void`	`cmdGoto(boolean isCmd)`
`private void`	`cmdHbond()`
`private void`	`cmdHelp()`
`private void`	`cmdHistory(int pt)`
`private void`	`cmdHover()`
`private void`	`cmdInvertSelected()`
`private void`	`cmdLabel(int index)`
`void`	`cmdLoad()`
`private void`	`cmdLog()`
`private void`	`cmdLoop()`
`private void`	`cmdMessage()`
`private void`	`cmdModel(int offset)` ONE difference between FRAME and MODEL: model 1 sets model NAMED one in the case of PDB frame 1 always sets the first model
`private void`	`cmdMove()`
`private void`	`cmdMoveto()`
`private boolean`	`cmdPause()`
`private void`	`cmdPrint()`
`private void`	`cmdPrompt()`
`private void`	`cmdReset()`
`private void`	`cmdRestore()`
`private void`	`cmdRestrict()`
`private void`	`cmdReturn(SV tv)`
`private void`	`cmdRotate(boolean isSpin, boolean isSelected)`
`private void`	`cmdSave()`
`void`	`cmdScript(int tok, java.lang.String filename, java.lang.String theScript)`
`private void`	`cmdSelect(int i)`
`private void`	`cmdSelectionHalos(int pt)`
`private void`	`cmdSet()`
`private void`	`cmdSetEcho()`
`private boolean`	`cmdSetLabel(java.lang.String str)`
`private void`	`cmdSetPicking()`
`private void`	`cmdSetPickingStyle()`
`private void`	`cmdSlab(boolean isDepth)`
`private void`	`cmdSsbond()`
`private void`	`cmdStructure()`
`private void`	`cmdSubset()`
`private void`	`cmdSync()`
`private void`	`cmdThrow()`
`private void`	`cmdTimeout(int index)`
`private void`	`cmdTranslate(boolean isSelected)`
`private void`	`cmdUnbind()`
`private void`	`cmdUndoRedoMove()`
`private void`	`cmdUnitcell(int i)`
`private void`	`cmdVector()`
`private void`	`cmdVibration()`
`private void`	`cmdWireframe()`
`private void`	`cmdZap(boolean isZapCommand)`
`private void`	`cmdZoom(boolean isZoomTo)`
`private void`	`colorShape(int shapeType, int index, boolean isBackground)`
`private void`	`commandLoop(boolean allowInterrupt)`
`boolean`	`compileScript(java.lang.String filename, java.lang.String strScript, boolean debugCompiler)`
`boolean`	`compileScriptFile(java.lang.String filename, boolean tQuiet)`
`private boolean`	`compileScriptFileInternal(java.lang.String filename, java.lang.String localPath, java.lang.String remotePath, java.lang.String scriptPath)`
`boolean`	`compileScriptString(java.lang.String script, boolean tQuiet)`
`private void`	`defineAtomSet(java.lang.String script)`
`private void`	`defineSets()` support for @xxx or define xxx commands
`void`	`delayScript(int millis)`
`void`	`deleteAtomsInVariables(BS bsDeleted)`
`boolean`	`dispatchCommands(boolean isSpt, boolean fromFunc, boolean isTry)`
`private void`	`doDelay(int millis)`
`boolean`	`doReport()`
`RadiusData`	`encodeRadiusParameter(int index, boolean isOnly, boolean allowAbsolute)`
`float`	`evalFunctionFloat(java.lang.Object func, java.lang.Object params, float[] values)`
`boolean`	`evalParallel(ScriptContext context, ShapeManager shapeManager)`
`private java.lang.Object`	`evaluate(java.lang.Object expr, boolean asVariable, boolean compileOnly)`
`void`	`evaluateCompiledScript(boolean isCmdLine_c_or_C_Option, boolean isCmdLine_C_Option, boolean historyDisabled, boolean listCommands, javajs.util.SB outputBuffer, boolean allowThreads)`
`java.lang.Object`	`evaluateExpression(java.lang.Object expr, boolean asVariable, boolean compileOnly)` a general-use method to evaluate a "SET" type expression.
`private void`	`executeCommands(boolean isTry, boolean reportCompletion)`
`private int[]`	`expandFloatArray(float[] a, int min)` Accepts a float array and expands [1 -3] to [1 2 3], for example.
`private void`	`finalizeLoad(boolean isAppend, boolean appendNew, boolean isConcat, boolean doOrient, int nFiles, int ac0, int modelCount0)`
`private java.lang.String`	`fixScriptPath(java.lang.String strScript, java.lang.String filename)`
`private void`	`frameControl(int i)`
`boolean`	`getAllowJSThreads()`
`BS`	`getAtomBitSet(java.lang.Object atomExpression)` a general method to evaluate a string representing an atom set.
`javajs.util.Lst<java.lang.Integer>`	`getAtomBitSetVector(int ac, java.lang.Object atomExpression)` just provides a vector list of atoms in a string-based expression
`java.lang.String`	`getColorRange(int i)`
`private java.lang.String`	`getCommand(int pc, boolean allThisLine, boolean addSemi)` used for recall of commands in the application console
`(package private) static javajs.util.SB`	`getContextTrace(Viewer vwr, ScriptContext sc, javajs.util.SB sb, boolean isTop)`
`java.util.Map<java.lang.String,SV>`	`getContextVariables()`
`java.util.Map<java.lang.String,java.lang.Object>`	`getDefinedAtomSets()`
`java.lang.String`	`getErrorLineMessage2()`
`private SV`	`getForVar(java.lang.String key)`
`java.lang.String`	`getFullPathName()`
`JmolCmdExtension`	`getIsoExt()`
`int`	`getLinenumber(ScriptContext c)`
`private java.lang.String`	`getLoadFilesList(int i, javajs.util.SB loadScript, javajs.util.SB sOptions, java.util.Map<java.lang.String,java.lang.Object> htParams, javajs.util.Lst<java.lang.String> fNames)`
`private void`	`getLoadModelIndex(int i, javajs.util.SB sOptions, java.util.Map<java.lang.String,java.lang.Object> htParams)`
`private int`	`getLoadSymmetryParams(int i, javajs.util.SB sOptions, java.util.Map<java.lang.String,java.lang.Object> htParams)`
`JmolMathExtension`	`getMathExt()`
`java.lang.String`	`getNextStatement()` when paused, indicates what statement will be next
`private javajs.util.P3[]`	`getObjectBoundingBox(java.lang.String id)`
`protected javajs.util.P3`	`getObjectCenter(java.lang.String axisID, int index, int modelIndex)`
`protected javajs.util.P4`	`getPlaneForObject(java.lang.String id, javajs.util.V3 vAB)`
`javajs.util.Quat[]`	`getQuaternionArray(java.lang.Object quaternionOrSVData, int itype)`
`java.lang.String`	`getScript()`
`ScriptContext`	`getScriptContext(java.lang.String why)`
`private int`	`getSetAxesTypeMad(int index)`
`private float`	`getSettingFloat(int pt)`
`private int`	`getSettingInt(int pt)`
`private java.lang.String`	`getSettingStr(int pt, boolean isJmolSet)` Accept an unquoted string if there is just one parameter regardless of its type.
`java.lang.Object`	`getShapeProperty(int shapeType, java.lang.String propertyName)`
`boolean`	`getShapePropertyData(int shapeType, java.lang.String propertyName, java.lang.Object[] data)`
`private int`	`getShapeType(int tok)`
`JmolSmilesExtension`	`getSmilesExt()`
`ScriptContext`	`getThisContext()`
`float`	`getTranslucentLevel(int i)`
`SV`	`getUserFunctionResult(java.lang.String name, javajs.util.Lst<SV> params, SV tokenAtom)`
`private float`	`getZoom(int ptCenter, int i, BS bs, float currentZoom)`
`void`	`haltExecution()`
`private boolean`	`isCommandDisplayable(int i)` provides support for the script editor
`boolean`	`isExecuting()`
`private boolean`	`isLoadOption(int tok)`
`boolean`	`isPaused()`
`boolean`	`isStateScript()`
`boolean`	`isStepping()`
`boolean`	`isStopped()`
`java.lang.String`	`loadFileAsync(java.lang.String prefix, java.lang.String filename, int i, boolean doClear)` Allows asynchronous file loading from the LOAD or SCRIPT command.
`void`	`loadFileResourceAsync(java.lang.String fileName)` load a static file asynchronously
`private void`	`logDebugScript(T[] st, int ifLevel)`
`private void`	`logLoadInfo(java.lang.String msg)`
`BS`	`lookupIdentifierValue(java.lang.String identifier)`
`private BS`	`lookupValue(java.lang.String setName, boolean plurals)`
`void`	`notifyResumeStatus()`
`void`	`pauseExecution(boolean withDelay)`
`(package private) void`	`popContext(boolean isFlowCommand, boolean statementOnly)`
`private void`	`processCommand(int tok)`
`private void`	`processShapeCommand(int tok)`
`private void`	`processTry(java.util.Map<java.lang.String,SV> cv)`
`private void`	`pushContext(ContextToken token, java.lang.String why)`
`private void`	`pushContext2(ContextToken token, java.lang.String why)`
`void`	`pushContextDown(java.lang.String why)`
`void`	`refresh(boolean doDelay)` Refresh the display NOW
`void`	`report(java.lang.String s)`
`private void`	`resetError()`
`private void`	`restoreFunction(JmolScriptFunction f, javajs.util.Lst<SV> params, SV tokenAtom)` note that functions requiring motion cannot be run in JavaScript
`void`	`restoreScriptContext(ScriptContext context, boolean isPopContext, boolean isFlowCommand, boolean statementOnly)`
`protected void`	`restrictSelected(boolean isBond, boolean doInvert)`
`void`	`resumeEval(ScriptContext sc)` From dispatchCommands and JmolThread resumeEval.
`void`	`resumePausedExecution()`
`private void`	`resumeViewer(java.lang.String why)`
`private SV`	`runFunctionAndRet(JmolScriptFunction function, java.lang.String name, javajs.util.Lst<SV> params, SV tokenAtom, boolean getReturn, boolean setContextPath, boolean allowThreads)`
`void`	`runScript(java.lang.String script)`
`void`	`runScriptBuffer(java.lang.String script, javajs.util.SB outputBuffer)` runs a script immediately and sends selected output to a provided SB
`private ScriptContext`	`saveContext(java.lang.String saveName)`
`protected void`	`setAtomProp(java.lang.String prop, java.lang.Object value, BS bs)`
`void`	`setCompiler()`
`private void`	`setCurrentCagePts(javajs.util.T3[] originABC, java.lang.String name)`
`void`	`setDebugging()`
`private boolean`	`setElementColor(java.lang.String str, int argb)`
`void`	`setException(ScriptException sx, java.lang.String msg, java.lang.String untranslated)`
`boolean`	`setMeshDisplayProperty(int shape, int i, int tok)`
`private void`	`setObjectArgb(java.lang.String str, int argb)`
`void`	`setObjectMad(int iShape, java.lang.String name, int mad)`
`private java.lang.String`	`setObjectProp(java.lang.String id, int tokCommand, int ptColor)`
`java.lang.String`	`setObjectProperty()`
`java.lang.String`	`setObjectPropSafe(java.lang.String id, int tokCommand)` called by Viewer in setting up a PyMOL scene.
`private int`	`setScriptExtensions()`
`java.lang.String`	`setShapeNameParameter(int i)`
`void`	`setShapeProperty(int shapeType, java.lang.String propertyName, java.lang.Object propertyValue)`
`void`	`setShapePropertyBs(int iShape, java.lang.String propertyName, java.lang.Object propertyValue, BS bs)`
`private void`	`setShapeSize(int shapeType, RadiusData rd)`
`void`	`setShapeSizeBs(int shapeType, int size, BS bs)`
`void`	`setShapeTranslucency(int shapeType, java.lang.String prefix, java.lang.String translucency, float translucentLevel, BS bs)`
`private void`	`setSize(int shape, float scale)`
`private void`	`setSizeBio(int iShape)`
`private boolean`	`setUnits(java.lang.String units, int tok)`
`ScriptEval`	`setViewer(Viewer vwr)`
`void`	`showString(java.lang.String str)`
`void`	`showStringPrint(java.lang.String str, boolean isPrint)`
`static java.lang.String`	`statementAsString(Viewer vwr, T[] statement, int iTok, boolean doLogMessages)`
`void`	`stepPausedExecution()`
`void`	`stopScriptThreads()`
`void`	`terminateAfterStep()`
`java.lang.String`	`toString()`
`boolean`	`useThreads()`

Methods inherited from class org.jmol.script.ScriptExpr
atomExpression, atomExpressionAt, compareFloat, compareFloatData, getAssocArray, getAtomBits, getBitsetProperty, getBitsetPropertyFloat, getCmdExt, getExt, getSeqCode, listBS, noCopy, parameterExpressionBoolean, parameterExpressionList, parameterExpressionSelect, parameterExpressionString, parameterExpressionToken, setStatement, setVariable

Methods inherited from class org.jmol.script.ScriptParam
atomCenterOrCoordinateParameter, centerParameter, centerParameterForModel, checkLast, checkLength, checkLength23, checkLength34, checkLengthErrorPt, checkToken, floatParameter, floatParameterRange, floatParameterSet, getArgbParam, getArgbParamLast, getArgbParamOrNone, getBondOrderFromString, getContextVariableAsVariable, getFloatEncodedInt, getHklPlane, getMadParameter, getParameter, getPartialBondOrderFromFloatEncodedInt, getPoint3f, getPoint4f, getPointArray, getPointOrPlane, getPointVector, getQuaternionParameter, getStringParameter, getToken, hklParameter, intParameter, intParameterRange, isArrayParameter, isCenterParameter, isColorParam, isFloatParameter, isPoint3f, listParameter, modelNumberParameter, objectNameParameter, optParameterAsString, paramAsStr, planeParameter, setBooleanProperty, setFloatProperty, setIntProperty, setStringProperty, stringParameter, stringParameterSet, tickParamAsStr, tokAt, xypParameter

Methods inherited from class org.jmol.script.ScriptError
bad, error, errorMore, errorStr, errorStr2, errorString, evalError, getErrorLineMessage, getErrorMessage, getErrorMessageUntranslated, integerOutOfRange, invArg, numberOutOfRange, setCursorWait, setErrorMessage, warning

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

scriptLevelMax
```
private static final int scriptLevelMax
```
See Also:

Constant Field Values

saveList

private static final java.lang.String saveList

See Also:: Constant Field Values

iProcess
```
private static int iProcess
```

mathExt
```
private JmolMathExtension mathExt
```

smilesExt
```
private JmolSmilesExtension smilesExt
```

cmdIso
```
private JmolCmdExtension cmdIso
```

sm
```
public ShapeManager sm
```

isJS
```
public boolean isJS
```

scriptDelayThread
```
private JmolThread scriptDelayThread
```

fileLoadThread
```
private JmolThread fileLoadThread
```

allowJSThreads
```
public boolean allowJSThreads
```

historyDisabled
```
public boolean historyDisabled
```

debugScript
```
private boolean debugScript
```

isCmdLine_C_Option
```
private boolean isCmdLine_C_Option
```

isCmdLine_c_or_C_Option

private boolean isCmdLine_c_or_C_Option

listCommands
```
private boolean listCommands
```

tQuiet
```
public boolean tQuiet
```

executionStopped
```
private boolean executionStopped
```

executionPaused
```
private boolean executionPaused
```

executionStepping
```
private boolean executionStepping
```

executing
```
private boolean executing
```

timeBeginExecution
```
private long timeBeginExecution
```

timeEndExecution
```
private long timeEndExecution
```

mustResumeEval
```
private boolean mustResumeEval
```

currentThread
```
private java.lang.Thread currentThread
```

compiler
```
public ScriptCompiler compiler
```

definedAtomSets

public java.util.Map<java.lang.String,java.lang.Object> definedAtomSets

outputBuffer
```
public javajs.util.SB outputBuffer
```

contextPath
```
private java.lang.String contextPath
```

scriptFileName
```
public java.lang.String scriptFileName
```

functionName
```
public java.lang.String functionName
```

isStateScript
```
public boolean isStateScript
```

scriptLevel
```
public int scriptLevel
```

scriptReportingLevel
```
private int scriptReportingLevel
```

commandHistoryLevelMax
```
public int commandHistoryLevelMax
```

aatoken
```
public T[][] aatoken
```

lineNumbers
```
private short[] lineNumbers
```

lineIndices
```
private int[][] lineIndices
```

script
```
private java.lang.String script
```

scriptExtensions

private java.lang.String scriptExtensions

pc
```
protected int pc
```

thisCommand
```
public java.lang.String thisCommand
```

fullCommand
```
public java.lang.String fullCommand
```

lineEnd
```
private int lineEnd
```

pcEnd
```
private int pcEnd
```

forceNoAddHydrogens
```
private boolean forceNoAddHydrogens
```

parallelProcessor

private JmolParallelProcessor parallelProcessor

pcResume
```
private int pcResume
```

Constructor Detail
- ScriptEval
```
public ScriptEval()
```

Method Detail

getMathExt
```
public JmolMathExtension getMathExt()
```

getSmilesExt

public JmolSmilesExtension getSmilesExt()

getIsoExt
```
public JmolCmdExtension getIsoExt()
```

getAllowJSThreads
```
public boolean getAllowJSThreads()
```

doReport
```
public boolean doReport()
```

getDefinedAtomSets

public java.util.Map<java.lang.String,java.lang.Object> getDefinedAtomSets()

isStateScript
```
public boolean isStateScript()
```

getScript
```
public java.lang.String getScript()
```

setViewer

public ScriptEval setViewer(Viewer vwr)

setCompiler
```
public void setCompiler()
```

compileScriptString

public boolean compileScriptString(java.lang.String script,
                                   boolean tQuiet)

compileScriptFile

public boolean compileScriptFile(java.lang.String filename,
                                 boolean tQuiet)

evaluateCompiledScript

public void evaluateCompiledScript(boolean isCmdLine_c_or_C_Option,
                                   boolean isCmdLine_C_Option,
                                   boolean historyDisabled,
                                   boolean listCommands,
                                   javajs.util.SB outputBuffer,
                                   boolean allowThreads)

useThreads
```
public boolean useThreads()
```

executeCommands

private void executeCommands(boolean isTry,
                             boolean reportCompletion)

resumeEval
```
public void resumeEval(ScriptContext sc)
```
From dispatchCommands and JmolThread resumeEval. After throwing a ScriptInterruption, all statements following the current one are lost. When a JavaScript timeout returns from a DELAY, MOVE, MOVETO, or other sleep-requiring command, it is the ScriptContext that contains all have to worry about this, because the current thread is just put to sleep, not stopped, but in JavaScript, where we only have one thread, we need to manage this more carefully. We re-enter the halted script here, using a saved script context. The program counter is incremented to skip the initiating statement, and all parent contexts up the line are set with mustResumeEval = true.

Parameters:

sc -

resumeViewer

private void resumeViewer(java.lang.String why)

runScript

public void runScript(java.lang.String script)
               throws ScriptException

Throws:: ScriptException

runScriptBuffer

public void runScriptBuffer(java.lang.String script,
                            javajs.util.SB outputBuffer)
                     throws ScriptException

runs a script immediately and sends selected output to a provided SB

Parameters:: script -; outputBuffer -
Throws:: ScriptException

checkScriptSilent
```
public ScriptContext checkScriptSilent(java.lang.String script)
```
a method for just checking a script

Parameters:

script -

Returns:

a ScriptContext that indicates errors and provides a tokenized version of the script that has passed all syntax checking, both in the compiler and the evaluator

getContextTrace

static javajs.util.SB getContextTrace(Viewer vwr,
                                      ScriptContext sc,
                                      javajs.util.SB sb,
                                      boolean isTop)

setDebugging
```
public void setDebugging()
```

haltExecution
```
public void haltExecution()
```

pauseExecution

public void pauseExecution(boolean withDelay)

stepPausedExecution
```
public void stepPausedExecution()
```

resumePausedExecution
```
public void resumePausedExecution()
```

isExecuting
```
public boolean isExecuting()
```

isPaused
```
public boolean isPaused()
```

isStepping
```
public boolean isStepping()
```

isStopped
```
public boolean isStopped()
```

getNextStatement
```
public java.lang.String getNextStatement()
```
when paused, indicates what statement will be next

Returns:

a string indicating the statement

getCommand

private java.lang.String getCommand(int pc,
                                    boolean allThisLine,
                                    boolean addSemi)

used for recall of commands in the application console

Parameters:: pc -; allThisLine -; addSemi -
Returns:: a string representation of the command

logDebugScript

private void logDebugScript(T[] st,
                            int ifLevel)

evaluateExpression
```
public java.lang.Object evaluateExpression(java.lang.Object expr,
                                           boolean asVariable,
                                           boolean compileOnly)
```
a general-use method to evaluate a "SET" type expression.

Parameters:

asVariable -

expr -

Returns:

an object of one of the following types: Boolean, Integer, Float, String, Point3f, BitSet

evaluate

private java.lang.Object evaluate(java.lang.Object expr,
                                  boolean asVariable,
                                  boolean compileOnly)

checkSelect

public boolean checkSelect(java.util.Map<java.lang.String,SV> h,
                           T[] where)

Check a map for a WHERE phrase

getAtomBitSet
```
public BS getAtomBitSet(java.lang.Object atomExpression)
```
a general method to evaluate a string representing an atom set.

Parameters:

atomExpression -

Returns:

is a bitset indicating the selected atoms

getAtomBitSetVector

public javajs.util.Lst<java.lang.Integer> getAtomBitSetVector(int ac,
                                                              java.lang.Object atomExpression)

just provides a vector list of atoms in a string-based expression

Parameters:: ac -; atomExpression -
Returns:: vector list of selected atoms

compileScript

public boolean compileScript(java.lang.String filename,
                             java.lang.String strScript,
                             boolean debugCompiler)

fixScriptPath

private java.lang.String fixScriptPath(java.lang.String strScript,
                                       java.lang.String filename)

setScriptExtensions
```
private int setScriptExtensions()
```

compileScriptFileInternal

private boolean compileScriptFileInternal(java.lang.String filename,
                                          java.lang.String localPath,
                                          java.lang.String remotePath,
                                          java.lang.String scriptPath)

evalFunctionFloat

public float evalFunctionFloat(java.lang.Object func,
                               java.lang.Object params,
                               float[] values)

getUserFunctionResult

public SV getUserFunctionResult(java.lang.String name,
                                javajs.util.Lst<SV> params,
                                SV tokenAtom)
                         throws ScriptException

Specified by:: getUserFunctionResult in class ScriptExpr
Throws:: ScriptException

runFunctionAndRet

private SV runFunctionAndRet(JmolScriptFunction function,
                             java.lang.String name,
                             javajs.util.Lst<SV> params,
                             SV tokenAtom,
                             boolean getReturn,
                             boolean setContextPath,
                             boolean allowThreads)
                      throws ScriptException

Throws:: ScriptException

processTry

private void processTry(java.util.Map<java.lang.String,SV> cv)
                 throws ScriptException

Throws:: ScriptException

breakAt
```
private void breakAt(int pt)
```

restoreFunction

private void restoreFunction(JmolScriptFunction f,
                             javajs.util.Lst<SV> params,
                             SV tokenAtom)
                      throws ScriptException

note that functions requiring motion cannot be run in JavaScript

Parameters:: f -; params -; tokenAtom -
Throws:: ScriptException

clearDefinedVariableAtomSets
```
public void clearDefinedVariableAtomSets()
```
Specified by:

clearDefinedVariableAtomSets in class ScriptExpr

defineSets
```
private void defineSets()
```
support for @xxx or define xxx commands

defineAtomSet

private void defineAtomSet(java.lang.String script)

lookupIdentifierValue

public BS lookupIdentifierValue(java.lang.String identifier)
                         throws ScriptException

Specified by:: lookupIdentifierValue in class ScriptExpr
Throws:: ScriptException

lookupValue

private BS lookupValue(java.lang.String setName,
                       boolean plurals)
                throws ScriptException

Throws:: ScriptException

deleteAtomsInVariables

public void deleteAtomsInVariables(BS bsDeleted)

getContextVariables

public java.util.Map<java.lang.String,SV> getContextVariables()

getThisContext
```
public ScriptContext getThisContext()
```

clearState

private void clearState(boolean tQuiet)

pushContextDown

public void pushContextDown(java.lang.String why)

pushContext

private void pushContext(ContextToken token,
                         java.lang.String why)
                  throws ScriptException

Throws:: ScriptException

pushContext2

private void pushContext2(ContextToken token,
                          java.lang.String why)

getScriptContext

public ScriptContext getScriptContext(java.lang.String why)

popContext

void popContext(boolean isFlowCommand,
                boolean statementOnly)

restoreScriptContext

public void restoreScriptContext(ScriptContext context,
                                 boolean isPopContext,
                                 boolean isFlowCommand,
                                 boolean statementOnly)

setException

public void setException(ScriptException sx,
                         java.lang.String msg,
                         java.lang.String untranslated)

statementAsString

public static java.lang.String statementAsString(Viewer vwr,
                                                 T[] statement,
                                                 int iTok,
                                                 boolean doLogMessages)

setObjectPropSafe

public java.lang.String setObjectPropSafe(java.lang.String id,
                                          int tokCommand)

called by Viewer in setting up a PyMOL scene.

restrictSelected

protected void restrictSelected(boolean isBond,
                                boolean doInvert)

Specified by:: restrictSelected in class ScriptParam

showString
```
public void showString(java.lang.String str)
```
Specified by:

showString in class ScriptError

showStringPrint

public void showStringPrint(java.lang.String str,
                            boolean isPrint)

report

public void report(java.lang.String s)

addProcess

private void addProcess(javajs.util.Lst<T[]> vProcess,
                        int pc,
                        int pt)

checkContinue
```
private boolean checkContinue()
                       throws ScriptException
```
checks to see if there is a pause condition, during which commands can still be issued, but with the ! first.

Returns:

false if there was a problem

Throws:

ScriptException

delayScript
```
public void delayScript(int millis)
```

doDelay
```
private void doDelay(int millis)
              throws ScriptException
```
Parameters:

millis - negative here bypasses max check

Throws:

ScriptException

evalParallel

public boolean evalParallel(ScriptContext context,
                            ShapeManager shapeManager)

isCommandDisplayable
```
private boolean isCommandDisplayable(int i)
```
provides support for the script editor

Parameters:

i -

Returns:

true if displayable

loadFileResourceAsync

public void loadFileResourceAsync(java.lang.String fileName)
                           throws ScriptException

load a static file asynchronously

Throws:: ScriptException

loadFileAsync
```
public java.lang.String loadFileAsync(java.lang.String prefix,
                                      java.lang.String filename,
                                      int i,
                                      boolean doClear)
                               throws ScriptException
```
Allows asynchronous file loading from the LOAD or SCRIPT command. Saves the context, initiates a FileLoadThread instance. When the file loading completes, the file data (sans filename) is saved in the FileManager cache under cache://localLoad_xxxxx. Context is resumed at this command in the script, and the file is then retrieved from the cache. Only run from JSmol/HTML5 when vwr.isJS; Incompatibilities: LOAD and SCRIPT commands, load() function only; only one "?" per LOAD command

Parameters:

prefix -

filename - or null if end of LOAD command and now just clearing out cache

i -

doClear - ensures only one file is in the cache for a given type

Returns:

cached file name if it exists

Throws:

ScriptException

logLoadInfo

private void logLoadInfo(java.lang.String msg)

notifyResumeStatus
```
public void notifyResumeStatus()
```

refresh
```
public void refresh(boolean doDelay)
             throws ScriptException
```
Refresh the display NOW

Specified by:

refresh in class ScriptExpr

Throws:

ScriptException

stopScriptThreads
```
public void stopScriptThreads()
```

getErrorLineMessage2

public java.lang.String getErrorLineMessage2()

getLinenumber

public int getLinenumber(ScriptContext c)

dispatchCommands

public boolean dispatchCommands(boolean isSpt,
                                boolean fromFunc,
                                boolean isTry)
                         throws ScriptException

Parameters:: isSpt -; fromFunc -; isTry -
Returns:: false only when still working through resumeEval
Throws:: ScriptException

commandLoop

private void commandLoop(boolean allowInterrupt)
                  throws ScriptException

Throws:: ScriptException

terminateAfterStep
```
public void terminateAfterStep()
```

processCommand

private void processCommand(int tok)
                     throws ScriptException

Throws:: ScriptException

checkExtension

private void checkExtension(int tok)
                     throws ScriptException

Throws:: ScriptException

processShapeCommand

private void processShapeCommand(int tok)
                          throws ScriptException

Throws:: ScriptException

cmdAnimation

private void cmdAnimation()
                   throws ScriptException

Throws:: ScriptException

cmdAxes

private void cmdAxes(int index)
              throws ScriptException

Throws:: ScriptException

cmdBackground

private void cmdBackground(int i)
                    throws ScriptException

Throws:: ScriptException

cmdBind

private void cmdBind()
              throws ScriptException

Throws:: ScriptException

cmdBondorder

private void cmdBondorder()
                   throws ScriptException

Throws:: ScriptException

cmdBoundbox

private void cmdBoundbox(int index)
                  throws ScriptException

Throws:: ScriptException

cmdCD

private void cmdCD()
            throws ScriptException

Throws:: ScriptException

cmdCenter

private void cmdCenter(int i)
                throws ScriptException

Throws:: ScriptException

cmdColor

private void cmdColor()
               throws ScriptException

Throws:: ScriptException

cmdDefine

private void cmdDefine()
                throws ScriptException

Throws:: ScriptException

cmdDelay

private void cmdDelay()
               throws ScriptException

Throws:: ScriptException

cmdDelete

private void cmdDelete()
                throws ScriptException

Throws:: ScriptException

cmdDisplay

private void cmdDisplay(boolean isDisplay)
                 throws ScriptException

Throws:: ScriptException

cmdDots

private void cmdDots(int iShape)
              throws ScriptException

Throws:: ScriptException

cmdEcho

private void cmdEcho(int index)
              throws ScriptException

Throws:: ScriptException

cmdFile

private void cmdFile()
              throws ScriptException

Throws:: ScriptException

cmdFixed

private void cmdFixed()
               throws ScriptException

Throws:: ScriptException

cmdFlow

private boolean cmdFlow(int tok,
                        boolean isForCheck,
                        javajs.util.Lst<T[]> vProcess)
                 throws ScriptException

Throws:: ScriptException

cmdFlowSwitch

private int cmdFlowSwitch(ContextToken c,
                          int tok)
                   throws ScriptException

Throws:: ScriptException

cmdFont

private void cmdFont(int shapeType,
                     float fontsize)
              throws ScriptException

Throws:: ScriptException

cmdFrank

private void cmdFrank(int i)
               throws ScriptException

Throws:: ScriptException

cmdFunc

private void cmdFunc()
              throws ScriptException

Throws:: ScriptException

cmdGetProperty

private void cmdGetProperty()
                     throws ScriptException

Throws:: ScriptException

cmdGoto

private void cmdGoto(boolean isCmd)
              throws ScriptException

Throws:: ScriptException

cmdHbond

private void cmdHbond()
               throws ScriptException

Throws:: ScriptException

cmdHelp

private void cmdHelp()
              throws ScriptException

Throws:: ScriptException

cmdHistory

private void cmdHistory(int pt)
                 throws ScriptException

Throws:: ScriptException

cmdHover

private void cmdHover()
               throws ScriptException

Throws:: ScriptException

cmdInvertSelected

private void cmdInvertSelected()
                        throws ScriptException

Throws:: ScriptException

cmdLabel

private void cmdLabel(int index)
               throws ScriptException

Throws:: ScriptException

cmdLoad

public void cmdLoad()
             throws ScriptException

Throws:: ScriptException

getLoadFilesList

private java.lang.String getLoadFilesList(int i,
                                          javajs.util.SB loadScript,
                                          javajs.util.SB sOptions,
                                          java.util.Map<java.lang.String,java.lang.Object> htParams,
                                          javajs.util.Lst<java.lang.String> fNames)
                                   throws ScriptException

Throws:: ScriptException

isLoadOption

private boolean isLoadOption(int tok)

getLoadModelIndex

private void getLoadModelIndex(int i,
                               javajs.util.SB sOptions,
                               java.util.Map<java.lang.String,java.lang.Object> htParams)
                        throws ScriptException

Throws:: ScriptException

getLoadSymmetryParams

private int getLoadSymmetryParams(int i,
                                  javajs.util.SB sOptions,
                                  java.util.Map<java.lang.String,java.lang.Object> htParams)
                           throws ScriptException

Throws:: ScriptException

checkPacked

private int checkPacked(int i,
                        java.util.Map<java.lang.String,java.lang.Object> htParams,
                        javajs.util.SB sOptions)
                 throws ScriptException

Throws:: ScriptException

finalizeLoad

private void finalizeLoad(boolean isAppend,
                          boolean appendNew,
                          boolean isConcat,
                          boolean doOrient,
                          int nFiles,
                          int ac0,
                          int modelCount0)
                   throws ScriptException

Throws:: ScriptException

cmdLog

private void cmdLog()
             throws ScriptException

Throws:: ScriptException

cmdLoop

private void cmdLoop()
              throws ScriptException

Throws:: ScriptException

cmdMessage

private void cmdMessage()
                 throws ScriptException

Throws:: ScriptException

cmdModel
```
private void cmdModel(int offset)
               throws ScriptException
```
ONE difference between FRAME and MODEL: model 1 sets model NAMED one in the case of PDB frame 1 always sets the first model

Parameters:

offset -

Throws:

ScriptException

cmdMove

private void cmdMove()
              throws ScriptException

Throws:: ScriptException

cmdMoveto

private void cmdMoveto()
                throws ScriptException

Throws:: ScriptException

cmdPause

private boolean cmdPause()
                  throws ScriptException

Throws:: ScriptException

cmdPrint

private void cmdPrint()
               throws ScriptException

Throws:: ScriptException

cmdPrompt

private void cmdPrompt()
                throws ScriptException

Throws:: ScriptException

cmdReset

private void cmdReset()
               throws ScriptException

Throws:: ScriptException

resetError
```
private void resetError()
```

cmdRestrict

private void cmdRestrict()
                  throws ScriptException

Throws:: ScriptException

cmdReturn

private void cmdReturn(SV tv)
                throws ScriptException

Throws:: ScriptException

cmdRotate

private void cmdRotate(boolean isSpin,
                       boolean isSelected)
                throws ScriptException

Throws:: ScriptException

cmdRestore

private void cmdRestore()
                 throws ScriptException

Throws:: ScriptException

cmdSave

private void cmdSave()
              throws ScriptException

Throws:: ScriptException

cmdScript

public void cmdScript(int tok,
                      java.lang.String filename,
                      java.lang.String theScript)
               throws ScriptException

Throws:: ScriptException

cmdSelect

private void cmdSelect(int i)
                throws ScriptException

Throws:: ScriptException

cmdSelectionHalos

private void cmdSelectionHalos(int pt)
                        throws ScriptException

Throws:: ScriptException

cmdSet

private void cmdSet()
             throws ScriptException

Throws:: ScriptException

cmdSetEcho

private void cmdSetEcho()
                 throws ScriptException

Throws:: ScriptException

cmdSetLabel

private boolean cmdSetLabel(java.lang.String str)
                     throws ScriptException

Throws:: ScriptException

cmdSetPicking

private void cmdSetPicking()
                    throws ScriptException

Throws:: ScriptException

cmdSetPickingStyle

private void cmdSetPickingStyle()
                         throws ScriptException

Throws:: ScriptException

cmdSlab

private void cmdSlab(boolean isDepth)
              throws ScriptException

Throws:: ScriptException

cmdSsbond

private void cmdSsbond()
                throws ScriptException

Throws:: ScriptException

cmdStructure

private void cmdStructure()
                   throws ScriptException

Throws:: ScriptException

cmdSubset

private void cmdSubset()
                throws ScriptException

Throws:: ScriptException

cmdSync

private void cmdSync()
              throws ScriptException

Throws:: ScriptException

cmdThrow

private void cmdThrow()
               throws ScriptException

Throws:: ScriptException

saveContext

private ScriptContext saveContext(java.lang.String saveName)

cmdTimeout

private void cmdTimeout(int index)
                 throws ScriptException

Throws:: ScriptException

cmdTranslate

private void cmdTranslate(boolean isSelected)
                   throws ScriptException

Throws:: ScriptException

cmdUnbind

private void cmdUnbind()
                throws ScriptException

Throws:: ScriptException

cmdUndoRedoMove

private void cmdUndoRedoMove()
                      throws ScriptException

Throws:: ScriptException

cmdUnitcell

private void cmdUnitcell(int i)
                  throws ScriptException

Throws:: ScriptException

setCurrentCagePts

private void setCurrentCagePts(javajs.util.T3[] originABC,
                               java.lang.String name)

cmdVector

private void cmdVector()
                throws ScriptException

Throws:: ScriptException

cmdVibration

private void cmdVibration()
                   throws ScriptException

Throws:: ScriptException

cmdWireframe

private void cmdWireframe()
                   throws ScriptException

Throws:: ScriptException

cmdZap

private void cmdZap(boolean isZapCommand)
             throws ScriptException

Throws:: ScriptException

cmdZoom

private void cmdZoom(boolean isZoomTo)
              throws ScriptException

Throws:: ScriptException

colorShape

private void colorShape(int shapeType,
                        int index,
                        boolean isBackground)
                 throws ScriptException

Throws:: ScriptException

encodeRadiusParameter

public RadiusData encodeRadiusParameter(int index,
                                        boolean isOnly,
                                        boolean allowAbsolute)
                                 throws ScriptException

Throws:: ScriptException

expandFloatArray
```
private int[] expandFloatArray(float[] a,
                               int min)
                        throws ScriptException
```
Accepts a float array and expands [1 -3] to [1 2 3], for example.

Parameters:

a -

min -

Returns:

int array

Throws:

ScriptException

frameControl

private void frameControl(int i)
                   throws ScriptException

Throws:: ScriptException

getColorRange

public java.lang.String getColorRange(int i)
                               throws ScriptException

Throws:: ScriptException

getForVar

private SV getForVar(java.lang.String key)
              throws ScriptException

Throws:: ScriptException

getFullPathName

public java.lang.String getFullPathName()
                                 throws ScriptException

Throws:: ScriptException

getObjectBoundingBox

private javajs.util.P3[] getObjectBoundingBox(java.lang.String id)

getObjectCenter

protected javajs.util.P3 getObjectCenter(java.lang.String axisID,
                                         int index,
                                         int modelIndex)

Specified by:: getObjectCenter in class ScriptParam

getPlaneForObject

protected javajs.util.P4 getPlaneForObject(java.lang.String id,
                                           javajs.util.V3 vAB)

Specified by:: getPlaneForObject in class ScriptParam

getQuaternionArray

public javajs.util.Quat[] getQuaternionArray(java.lang.Object quaternionOrSVData,
                                             int itype)

getSetAxesTypeMad

private int getSetAxesTypeMad(int index)
                       throws ScriptException

Throws:: ScriptException

getSettingFloat

private float getSettingFloat(int pt)
                       throws ScriptException

Throws:: ScriptException

getSettingInt

private int getSettingInt(int pt)
                   throws ScriptException

Throws:: ScriptException

getSettingStr
```
private java.lang.String getSettingStr(int pt,
                                       boolean isJmolSet)
                                throws ScriptException
```
Accept an unquoted string if there is just one parameter regardless of its type. In other words, these commands cannot accept a variable name by itself.

Parameters:

pt -

isJmolSet -

Returns:

string parameter

Throws:

ScriptException

getShapeProperty

public java.lang.Object getShapeProperty(int shapeType,
                                         java.lang.String propertyName)

getShapePropertyData

public boolean getShapePropertyData(int shapeType,
                                    java.lang.String propertyName,
                                    java.lang.Object[] data)

getShapeType

private int getShapeType(int tok)
                  throws ScriptException

Throws:: ScriptException

getTranslucentLevel

public float getTranslucentLevel(int i)
                          throws ScriptException

Throws:: ScriptException

getZoom

private float getZoom(int ptCenter,
                      int i,
                      BS bs,
                      float currentZoom)
               throws ScriptException

Throws:: ScriptException

setElementColor

private boolean setElementColor(java.lang.String str,
                                int argb)

setMeshDisplayProperty

public boolean setMeshDisplayProperty(int shape,
                                      int i,
                                      int tok)
                               throws ScriptException

Parameters:: shape -; i -; tok -
Returns:: true if successful
Throws:: ScriptException

setObjectArgb

private void setObjectArgb(java.lang.String str,
                           int argb)

setObjectMad

public void setObjectMad(int iShape,
                         java.lang.String name,
                         int mad)

setObjectProp

private java.lang.String setObjectProp(java.lang.String id,
                                       int tokCommand,
                                       int ptColor)
                                throws ScriptException

Throws:: ScriptException

setObjectProperty

public java.lang.String setObjectProperty()
                                   throws ScriptException

Throws:: ScriptException

setShapeNameParameter

public java.lang.String setShapeNameParameter(int i)
                                       throws ScriptException

Throws:: ScriptException

setShapeProperty

public void setShapeProperty(int shapeType,
                             java.lang.String propertyName,
                             java.lang.Object propertyValue)

setShapePropertyBs

public void setShapePropertyBs(int iShape,
                               java.lang.String propertyName,
                               java.lang.Object propertyValue,
                               BS bs)

setShapeSize

private void setShapeSize(int shapeType,
                          RadiusData rd)

setShapeSizeBs

public void setShapeSizeBs(int shapeType,
                           int size,
                           BS bs)

setShapeTranslucency

public void setShapeTranslucency(int shapeType,
                                 java.lang.String prefix,
                                 java.lang.String translucency,
                                 float translucentLevel,
                                 BS bs)

setSize

private void setSize(int shape,
                     float scale)
              throws ScriptException

Throws:: ScriptException

setSizeBio

private void setSizeBio(int iShape)
                 throws ScriptException

Throws:: ScriptException

setUnits

private boolean setUnits(java.lang.String units,
                         int tok)
                  throws ScriptException

Throws:: ScriptException

toString
```
public java.lang.String toString()
```
Overrides:

toString in class java.lang.Object

setAtomProp

protected void setAtomProp(java.lang.String prop,
                           java.lang.Object value,
                           BS bs)

Specified by:: setAtomProp in class ScriptExpr

Class ScriptEval

Field Summary

Fields inherited from class org.jmol.script.ScriptExpr

Fields inherited from class org.jmol.script.ScriptParam

Fields inherited from class org.jmol.script.ScriptError

Constructor Summary

Method Summary

Methods inherited from class org.jmol.script.ScriptExpr

Methods inherited from class org.jmol.script.ScriptParam

Methods inherited from class org.jmol.script.ScriptError

Methods inherited from class java.lang.Object

Field Detail

scriptLevelMax

saveList

iProcess

mathExt

smilesExt

cmdIso

sm

isJS

scriptDelayThread

fileLoadThread

allowJSThreads

historyDisabled

debugScript

isCmdLine_C_Option

isCmdLine_c_or_C_Option

listCommands

tQuiet

executionStopped

executionPaused

executionStepping

executing

timeBeginExecution

timeEndExecution

mustResumeEval

currentThread

compiler

definedAtomSets

outputBuffer

contextPath

scriptFileName

functionName

isStateScript

scriptLevel

scriptReportingLevel

commandHistoryLevelMax

aatoken

lineNumbers

lineIndices

script

scriptExtensions

pc

thisCommand

fullCommand

lineEnd

pcEnd

forceNoAddHydrogens

parallelProcessor

pcResume

Constructor Detail

ScriptEval

Method Detail

getMathExt

getSmilesExt

getIsoExt

getAllowJSThreads

doReport

getDefinedAtomSets

isStateScript

getScript

setViewer

setCompiler

compileScriptString

compileScriptFile

evaluateCompiledScript

useThreads

executeCommands

resumeEval

resumeViewer