org.jmol.shapespecial

Class Ellipsoids

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.AtomShape

org.jmol.shapespecial.Ellipsoids

public class Ellipsoids
extends AtomShape

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) static class	Ellipsoids.Ellipsoid

Field Summary

Fields

Modifier and Type	Field and Description
(package private) short[][]	colixset
(package private) Ellipsoids.Ellipsoid	ellipsoid
(package private) boolean	haveEllipsoids
(package private) java.util.Map<java.lang.String,Ellipsoids.Ellipsoid>	htEllipsoids
private int	iSelect
(package private) short[][]	madset
(package private) byte[][]	paletteIDset

Fields inherited from class org.jmol.shape.AtomShape

atomCount, atoms, bsColixSet, bsSizeSet, colixes, isActive, mads, paletteIDs

Fields inherited from class org.jmol.shape.Shape

g3d, isBioShape, modelSet, myVisibilityFlag, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, viewer, xmlProperties

Constructor Summary

Constructors

Constructor and Description
Ellipsoids()

Method Summary

Methods

Modifier and Type	Method and Description
private void	checkSets()
int	getIndexFromName(java.lang.String thisID)
boolean	getProperty(java.lang.String property, java.lang.Object[] data)
java.lang.String	getShapeState()
private void	getStateAtoms(java.lang.StringBuffer sb)
private void	getStateID(java.lang.StringBuffer sb)
void	setProperty(java.lang.String propertyName, java.lang.Object value, java.util.BitSet bs) may come from any source -- executed AFTER a shape's own setProperty method
protected void	setSize(int size, java.util.BitSet bsSelected)
void	setVisibilityFlags(java.util.BitSet bs)
private void	updateEquation(Ellipsoids.Ellipsoid ellipsoid)

Methods inherited from class org.jmol.shape.AtomShape

getSize, initModelSet, setColixAndPalette, setModelClickability, setSize

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColorCommand, getColorCommand, getFontCommand, getProperty, getShapeCommands, getShapeCommands, getShapeDetail, getSize, getTranslucentLabel, getViewer, initializeShape, initShape, merge, setColix, setColix, setColix, setModelSet, setShapeProperty, setShapeSize, setStateInfo, setStateInfo, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

htEllipsoids

java.util.Map<java.lang.String,Ellipsoids.Ellipsoid> htEllipsoids

haveEllipsoids

boolean haveEllipsoids

colixset

short[][] colixset

paletteIDset

byte[][] paletteIDset

madset

short[][] madset

ellipsoid

Ellipsoids.Ellipsoid ellipsoid

iSelect

private int iSelect

Constructor Detail

Ellipsoids

public Ellipsoids()

Method Detail

getProperty

public boolean getProperty(java.lang.String property,
                  java.lang.Object[] data)

Overrides:

getProperty in class Shape

Returns:

true if serviced

getIndexFromName

public int getIndexFromName(java.lang.String thisID)

Overrides:

getIndexFromName in class Shape

Returns:

index

setSize

protected void setSize(int size,
           java.util.BitSet bsSelected)

Overrides:

setSize in class AtomShape

setProperty

public void setProperty(java.lang.String propertyName,
               java.lang.Object value,
               java.util.BitSet bs)

Description copied from class: Shape

may come from any source -- executed AFTER a shape's own setProperty method

Overrides:

setProperty in class AtomShape

checkSets

private void checkSets()

updateEquation

private void updateEquation(Ellipsoids.Ellipsoid ellipsoid)

getShapeState

public java.lang.String getShapeState()

Overrides:

getShapeState in class AtomShape

getStateID

private void getStateID(java.lang.StringBuffer sb)

getStateAtoms

private void getStateAtoms(java.lang.StringBuffer sb)

setVisibilityFlags

public void setVisibilityFlags(java.util.BitSet bs)

Overrides:

setVisibilityFlags in class Shape