org.jmol.adapter.readers.xml

Class XmlMolproReader

java.lang.Object

org.jmol.adapter.smarter.AtomSetCollectionReader

org.jmol.adapter.readers.xml.XmlReader

org.jmol.adapter.readers.xml.XmlCmlReader

org.jmol.adapter.readers.xml.XmlMolproReader

public class XmlMolproReader
extends XmlCmlReader

A Molpro 2005 reader

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) class	XmlMolproReader.MolproHandler

Nested classes/interfaces inherited from class org.jmol.adapter.readers.xml.XmlReader

XmlReader.DummyResolver, XmlReader.JmolXmlHandler

Field Summary

Fields inherited from class org.jmol.adapter.readers.xml.XmlCmlReader

CML, CRYSTAL, CRYSTAL_SCALAR, CRYSTAL_SYMMETRY, CRYSTAL_SYMMETRY_TRANSFORM3, LATTICE_VECTOR, MODULE, MOLECULE, MOLECULE_ATOM, MOLECULE_ATOM_ARRAY, MOLECULE_ATOM_BUILTIN, MOLECULE_ATOM_SCALAR, MOLECULE_BOND, MOLECULE_BOND_ARRAY, MOLECULE_BOND_BUILTIN, MOLECULE_FORMULA, START, state, SYMMETRY, tokens

Fields inherited from class org.jmol.adapter.readers.xml.XmlReader

atom, chars, implementedAttributes, keepChars, parent

Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

addVibrations, ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, continuing, desiredModelNumber, desiredVibrationNumber, doApplySymmetry, doc, doCentralize, doCheckUnitCell, doPackUnitCell, doProcessLines, fileName, fileOffset, filePath, fileScaling, filter, filterHetero, getHeader, haveModel, havePartialChargeFilter, htParams, ignoreFileSpaceGroupName, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveFractionalCoordinates, iHaveSymmetryOperators, iHaveUnitCell, isBinary, isSequential, isTrajectory, latticeCells, line, matUnitCellOrientation, modelNumber, next, notionalUnitCell, os, prevline, ptLine, ptSupercell, reader, readerName, readMolecularOrbitals, reverseModels, spaceGroup, stateScriptVersionInt, strSupercell, symmetry, templateAtomCount, trajectorySteps, useAltNames, vibrationNumber, viewer

Constructor Summary

Constructors

Constructor and Description
XmlMolproReader()

Method Summary

Methods

Modifier and Type	Method and Description
protected XmlReader.JmolXmlHandler	getHandler(java.lang.Object xmlReader)
protected java.lang.String[]	getImplementedAttributes()
void	processEndElement2(java.lang.String localName)
void	processStartElement2(java.lang.String localName, java.util.Map<java.lang.String,java.lang.String> atts)

Methods inherited from class org.jmol.adapter.readers.xml.XmlCmlReader

applySymmetryAndSetTrajectory, breakOutAtomTokens, breakOutBondTokens, breakOutTokens, checkAtomArrayLength, checkBondArrayLength, parseBondToken, processEndElement, processStartElement

Methods inherited from class org.jmol.adapter.readers.xml.XmlReader

initializeReader, parseReaderXML, processXml, processXml, setKeepChars

Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

addJmolScript, addPrimitiveLatticeVector, addSites, addSiteScript, appendLoadNote, checkFilter, checkLastModel, checkLine, checkLineForScript, checkLineForScript, clearUnitCell, cloneLastAtomSet, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, doGetVibration, fillDataBlock, fillDataBlock, fillFloatArray, fillFrequencyData, filterAtom, finalizeReader, getElementSymbol, getFortranFormatLengths, getStrings, getSymmetry, getTokens, getTokens, getTokens, getTokensFloat, initializeSymmetry, initializeTrajectoryFile, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseStringInfestedFloatArray, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, processBinaryDocument, read3Vectors, readData, readLine, readLines, set2D, setAtomCoord, setAtomCoord, setElementAndIsotope, setFilter, setFractionalCoordinates, setIsPDB, setMOData, setPdb, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlMolproReader

XmlMolproReader()

Method Detail

getImplementedAttributes

protected java.lang.String[] getImplementedAttributes()

Overrides:

getImplementedAttributes in class XmlCmlReader

processStartElement2

public void processStartElement2(java.lang.String localName,
                        java.util.Map<java.lang.String,java.lang.String> atts)

processEndElement2

public void processEndElement2(java.lang.String localName)

getHandler

protected XmlReader.JmolXmlHandler getHandler(java.lang.Object xmlReader)

Overrides:

getHandler in class XmlReader