org.jmol.modelsetbio

Class Resolver

java.lang.Object

org.jmol.modelsetbio.Resolver

All Implemented Interfaces:

JmolBioResolver

public final class Resolver
extends java.lang.Object
implements JmolBioResolver

Constructor Summary

Constructors

Constructor and Description
Resolver()

Method Summary

Methods

Modifier and Type	Method and Description
Polymer	buildBioPolymer(Group group, Group[] groups, int i, boolean checkPolymerConnections)
void	clearBioPolymers(Group[] groups, int groupCount, java.util.BitSet alreadyDefined)
Group	distinguishAndPropagateGroup(Chain chain, java.lang.String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, Atom[] atoms)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Resolver

public Resolver()

Method Detail

distinguishAndPropagateGroup

public Group distinguishAndPropagateGroup(Chain chain,
                                 java.lang.String group3,
                                 int seqcode,
                                 int firstAtomIndex,
                                 int maxAtomIndex,
                                 int modelIndex,
                                 int[] specialAtomIndexes,
                                 Atom[] atoms)

Specified by:

distinguishAndPropagateGroup in interface JmolBioResolver

buildBioPolymer

public Polymer buildBioPolymer(Group group,
                      Group[] groups,
                      int i,
                      boolean checkPolymerConnections)

Specified by:

buildBioPolymer in interface JmolBioResolver

clearBioPolymers

public void clearBioPolymers(Group[] groups,
                    int groupCount,
                    java.util.BitSet alreadyDefined)

Specified by:

clearBioPolymers in interface JmolBioResolver