org.jmol.applet

Class Jmol

java.lang.Object

org.jmol.applet.Jmol

All Implemented Interfaces:

JmolAppletInterface, WrappedApplet

public class Jmol
extends java.lang.Object
implements WrappedApplet

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) class	Jmol.MyStatusListener

Field Summary

Fields

Modifier and Type	Field and Description
(package private) AppletWrapper	appletWrapper
(package private) java.lang.String[]	callbacks
protected boolean	doTranslate
(package private) JmolFileDropper	dropper
(package private) java.lang.String	fullName
protected java.awt.Graphics	gRight
private boolean	hasProgressBar
(package private) boolean	haveDocumentAccess
(package private) java.lang.String	htmlName
(package private) boolean	isSigned
protected boolean	isStereoSlave
private boolean	isUpdating
(package private) java.lang.String	language
(package private) java.lang.String	languagePath
private int	lastMotionEventNumber
(package private) boolean	loading
(package private) boolean	mayScript
(package private) java.lang.StringBuffer	outputBuffer
private int	paintCounter
private static java.lang.String[]	progressbarMsgs
private static boolean	REQUIRE_PROGRESSBAR
private static int	SCRIPT_CHECK
private static int	SCRIPT_NOWAIT
private static int	SCRIPT_WAIT
boolean	showPaintTime
private java.lang.String	statusForm
private java.lang.String	statusText
private java.lang.String	statusTextarea
(package private) java.lang.String	syncId
private long	timeBegin
private int	timeCount
private int	timeLast
private int	timeTotal
protected JmolViewer	viewer

Constructor Summary

Constructors

Constructor and Description
Jmol()

Method Summary

Methods

Modifier and Type	Method and Description
void	destroy()
private java.lang.String	fmt(int num)
java.lang.String	getAppletInfo()
private boolean	getBooleanValue(java.lang.String propertyName, boolean defaultValue)
(package private) java.lang.String	getParameter(java.lang.String paramName)
java.lang.Object	getProperty(java.lang.String infoType)
java.lang.Object	getProperty(java.lang.String infoType, java.lang.String paramInfo)
java.lang.String	getPropertyAsJSON(java.lang.String infoType)
java.lang.String	getPropertyAsJSON(java.lang.String infoType, java.lang.String paramInfo)
java.lang.String	getPropertyAsString(java.lang.String infoType)
java.lang.String	getPropertyAsString(java.lang.String infoType, java.lang.String paramInfo)
private java.lang.String	getValue(java.lang.String propertyName, java.lang.String defaultValue)
private java.lang.String	getValueLowerCase(java.lang.String paramName, java.lang.String defaultValue)
boolean	handleEvent(java.awt.Event e)
void	init()
void	initApplication()
void	initWindows()
java.lang.String	loadDOMNode(JSObject DOMNode)
java.lang.String	loadInline(java.lang.String strModel) Deprecated.
java.lang.String	loadInline(java.lang.String[] strModels) Deprecated.
java.lang.String	loadInline(java.lang.String[] strModels, java.lang.String script) Deprecated.
java.lang.String	loadInline(java.lang.String strModel, java.lang.String script) Deprecated.
java.lang.String	loadInlineArray(java.lang.String[] strModels, java.lang.String script, boolean isAppend)
private java.lang.String	loadInlineSeparated(java.lang.String strModel, java.lang.String script)
java.lang.String	loadInlineString(java.lang.String strModel, java.lang.String script, boolean isAppend)
java.lang.String	loadNodeId(java.lang.String nodeId)
void	paint(java.awt.Graphics g)
private void	printProgressbarMessage(java.awt.Graphics g)
void	script(java.lang.String script)
java.lang.String	scriptCheck(java.lang.String script)
java.lang.String	scriptNoWait(java.lang.String script)
private java.lang.String	scriptProcessor(java.lang.String script, java.lang.String statusParams, int processType)
java.lang.String	scriptWait(java.lang.String script)
java.lang.String	scriptWait(java.lang.String script, java.lang.String statusParams)
java.lang.String	scriptWaitOutput(java.lang.String script)
(package private) void	sendJsTextareaStatus(java.lang.String message)
(package private) void	sendJsTextStatus(java.lang.String message)
void	setAppletWrapper(AppletWrapper appletWrapper)
private void	setLogging()
java.awt.Graphics	setStereoGraphics(boolean isStereo)
private void	setStringProperty(java.lang.String name, java.lang.String value)
private void	setValue(java.lang.String name, java.lang.String defaultValue)
private void	showTimes(int x, int y, java.awt.Graphics g)
private void	startPaintClock()
private void	stopPaintClock()
void	syncScript(java.lang.String script)
void	update(java.awt.Graphics g)
private void	update(java.awt.Graphics g, java.lang.String source)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mayScript

boolean mayScript

haveDocumentAccess

boolean haveDocumentAccess

loading

boolean loading

callbacks

java.lang.String[] callbacks

language

java.lang.String language

htmlName

java.lang.String htmlName

fullName

java.lang.String fullName

syncId

java.lang.String syncId

languagePath

java.lang.String languagePath

appletWrapper

AppletWrapper appletWrapper

viewer

protected JmolViewer viewer

REQUIRE_PROGRESSBAR

private static final boolean REQUIRE_PROGRESSBAR

See Also:

Constant Field Values

hasProgressBar

private boolean hasProgressBar

doTranslate

protected boolean doTranslate

statusForm

private java.lang.String statusForm

statusText

private java.lang.String statusText

statusTextarea

private java.lang.String statusTextarea

paintCounter

private int paintCounter

isSigned

boolean isSigned

dropper

JmolFileDropper dropper

showPaintTime

public boolean showPaintTime

isUpdating

private boolean isUpdating

gRight

protected java.awt.Graphics gRight

isStereoSlave

protected boolean isStereoSlave

progressbarMsgs

private static final java.lang.String[] progressbarMsgs

timeLast

private int timeLast

timeCount

private int timeCount

timeTotal

private int timeTotal

timeBegin

private long timeBegin

lastMotionEventNumber

private int lastMotionEventNumber

SCRIPT_CHECK

private static final int SCRIPT_CHECK

See Also:

Constant Field Values

SCRIPT_WAIT

private static final int SCRIPT_WAIT

See Also:

Constant Field Values

SCRIPT_NOWAIT

private static final int SCRIPT_NOWAIT

See Also:

Constant Field Values

outputBuffer

java.lang.StringBuffer outputBuffer

Constructor Detail

Jmol

public Jmol()

Method Detail

setAppletWrapper

public void setAppletWrapper(AppletWrapper appletWrapper)

Specified by:

setAppletWrapper in interface WrappedApplet

init

public void init()

Specified by:

init in interface WrappedApplet

destroy

public void destroy()

Specified by:

destroy in interface WrappedApplet

getParameter

java.lang.String getParameter(java.lang.String paramName)

setStereoGraphics

public java.awt.Graphics setStereoGraphics(boolean isStereo)

Specified by:

setStereoGraphics in interface JmolAppletInterface

initWindows

public void initWindows()

setLogging

private void setLogging()

getBooleanValue

private boolean getBooleanValue(java.lang.String propertyName,
                      boolean defaultValue)

getValue

private java.lang.String getValue(java.lang.String propertyName,
                        java.lang.String defaultValue)

getValueLowerCase

private java.lang.String getValueLowerCase(java.lang.String paramName,
                                 java.lang.String defaultValue)

initApplication

public void initApplication()

setValue

private void setValue(java.lang.String name,
            java.lang.String defaultValue)

setStringProperty

private void setStringProperty(java.lang.String name,
                     java.lang.String value)

sendJsTextStatus

void sendJsTextStatus(java.lang.String message)

sendJsTextareaStatus

void sendJsTextareaStatus(java.lang.String message)

paint

public void paint(java.awt.Graphics g)

Specified by:

paint in interface WrappedApplet

update

public void update(java.awt.Graphics g)

Specified by:

update in interface WrappedApplet

update

private void update(java.awt.Graphics g,
          java.lang.String source)

printProgressbarMessage

private void printProgressbarMessage(java.awt.Graphics g)

handleEvent

public boolean handleEvent(java.awt.Event e)

Specified by:

handleEvent in interface WrappedApplet

startPaintClock

private void startPaintClock()

stopPaintClock

private void stopPaintClock()

fmt

private java.lang.String fmt(int num)

showTimes

private void showTimes(int x,
             int y,
             java.awt.Graphics g)

scriptProcessor

private java.lang.String scriptProcessor(java.lang.String script,
                               java.lang.String statusParams,
                               int processType)

script

public void script(java.lang.String script)

Specified by:

script in interface JmolAppletInterface

scriptCheck

public java.lang.String scriptCheck(java.lang.String script)

Specified by:

scriptCheck in interface JmolAppletInterface

scriptNoWait

public java.lang.String scriptNoWait(java.lang.String script)

Specified by:

scriptNoWait in interface JmolAppletInterface

scriptWait

public java.lang.String scriptWait(java.lang.String script)

Specified by:

scriptWait in interface JmolAppletInterface

scriptWait

public java.lang.String scriptWait(java.lang.String script,
                          java.lang.String statusParams)

Specified by:

scriptWait in interface JmolAppletInterface

scriptWaitOutput

public java.lang.String scriptWaitOutput(java.lang.String script)

Specified by:

scriptWaitOutput in interface JmolAppletInterface

syncScript

public void syncScript(java.lang.String script)

Specified by:

syncScript in interface JmolAppletInterface

getAppletInfo

public java.lang.String getAppletInfo()

Specified by:

getAppletInfo in interface WrappedApplet

getProperty

public java.lang.Object getProperty(java.lang.String infoType)

Specified by:

getProperty in interface JmolAppletInterface

getProperty

public java.lang.Object getProperty(java.lang.String infoType,
                           java.lang.String paramInfo)

Specified by:

getProperty in interface JmolAppletInterface

getPropertyAsString

public java.lang.String getPropertyAsString(java.lang.String infoType)

Specified by:

getPropertyAsString in interface JmolAppletInterface

getPropertyAsString

public java.lang.String getPropertyAsString(java.lang.String infoType,
                                   java.lang.String paramInfo)

Specified by:

getPropertyAsString in interface JmolAppletInterface

getPropertyAsJSON

public java.lang.String getPropertyAsJSON(java.lang.String infoType)

Specified by:

getPropertyAsJSON in interface JmolAppletInterface

getPropertyAsJSON

public java.lang.String getPropertyAsJSON(java.lang.String infoType,
                                 java.lang.String paramInfo)

Specified by:

getPropertyAsJSON in interface JmolAppletInterface

loadInlineString

public java.lang.String loadInlineString(java.lang.String strModel,
                                java.lang.String script,
                                boolean isAppend)

Specified by:

loadInlineString in interface JmolAppletInterface

loadInlineArray

public java.lang.String loadInlineArray(java.lang.String[] strModels,
                               java.lang.String script,
                               boolean isAppend)

Specified by:

loadInlineArray in interface JmolAppletInterface

loadInline

public java.lang.String loadInline(java.lang.String strModel)

Deprecated.

Specified by:

loadInline in interface JmolAppletInterface

Parameters:

strModel -

Returns:

error or null

loadInline

public java.lang.String loadInline(java.lang.String strModel,
                          java.lang.String script)

Deprecated.

Specified by:

loadInline in interface JmolAppletInterface

Parameters:

strModel -

script -

Returns:

error or null

loadInline

public java.lang.String loadInline(java.lang.String[] strModels)

Deprecated.

Specified by:

loadInline in interface JmolAppletInterface

Parameters:

strModels -

Returns:

error or null

loadInline

public java.lang.String loadInline(java.lang.String[] strModels,
                          java.lang.String script)

Deprecated.

Specified by:

loadInline in interface JmolAppletInterface

Parameters:

strModels -

script -

Returns:

error or null

loadInlineSeparated

private java.lang.String loadInlineSeparated(java.lang.String strModel,
                                   java.lang.String script)

loadDOMNode

public java.lang.String loadDOMNode(JSObject DOMNode)

Specified by:

loadDOMNode in interface JmolAppletInterface

loadNodeId

public java.lang.String loadNodeId(java.lang.String nodeId)

Specified by:

loadNodeId in interface JmolAppletInterface