org.jmol.jvxl.readers
Class IsoFxyzReader

java.lang.Object
  org.jmol.jvxl.readers.SurfaceReader
      org.jmol.jvxl.readers.VolumeDataReader
          org.jmol.jvxl.readers.IsoFxyzReader

All Implemented Interfaces:

VertexDataServer

 class IsoFxyzReader
extends VolumeDataReader

Field Summary

private float[][][]	data
private java.lang.String	functionName

Fields inherited from class org.jmol.jvxl.readers.VolumeDataReader

allowMapData, dataType, point, precalculateVoxelData

Fields inherited from class org.jmol.jvxl.readers.SurfaceReader

allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, isAnisotropic, isEccentric, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, mappingPlane, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin

Constructor Summary

IsoFxyzReader(SurfaceGenerator sg)

Method Summary

float	getValue(int x, int y, int z, int ptyz) for readers only
protected void	setup()

Methods inherited from class org.jmol.jvxl.readers.VolumeDataReader

closeReader, generateCube, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelDataIndividually, setVoxelRange

Methods inherited from class org.jmol.jvxl.readers.SurfaceReader

addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, jvxlUpdateInfo, readAndSetVolumeParameters, readColorData, readTheVolumeData, resetIsosurface, selectPocket, setBoundingBox, setMappingPlane, setOutputStream, setVectorAnisotropy, setVertexAnisotropy, setVolumeData, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

functionName

private java.lang.String functionName

data

private float[][][] data

Constructor Detail

IsoFxyzReader

IsoFxyzReader(SurfaceGenerator sg)

Method Detail

setup

protected void setup()

Overrides:

setup in class VolumeDataReader

getValue

public float getValue(int x,
                      int y,
                      int z,
                      int ptyz)

Description copied from interface: VertexDataServer

for readers only

Specified by:

getValue in interface VertexDataServer

Overrides:

getValue in class SurfaceReader

Returns:

value[x][y][z]