org.jmol.jvxl.readers
Class IsoFxyReader

java.lang.Object
  org.jmol.jvxl.readers.VoxelReader
      org.jmol.jvxl.readers.VolumeDataReader
          org.jmol.jvxl.readers.IsoFxyReader

All Implemented Interfaces:

VertexDataServer

 class IsoFxyReader
extends VolumeDataReader

Field Summary

private float[][]	data
private java.lang.String	functionName
private boolean	isPlanarMapping

Fields inherited from class org.jmol.jvxl.readers.VolumeDataReader

allowMapData, anisotropy, center, dataType, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, isAnisotropic, isEccentric, point, precalculateVoxelData

Fields inherited from class org.jmol.jvxl.readers.VoxelReader

ANGSTROMS_PER_BOHR, cJvxlEdgeNaN, colorEncoder, colorFractionBase, colorFractionRange, contourVertexCount, defaultColorFractionBase, defaultColorFractionRange, defaultCutoff, defaultEdgeFractionBase, defaultEdgeFractionRange, defaultMappedDataMax, defaultMappedDataMin, edgeFractionBase, edgeFractionRange, fractionData, fReturn, isApbsDx, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, marchingSquares, meshData, meshDataServer, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData

Constructor Summary

IsoFxyReader(SurfaceGenerator sg)

Method Summary

protected float	getValue(int x, int y, int z)
protected void	setup()

Methods inherited from class org.jmol.jvxl.readers.VolumeDataReader

generateCube, readVolumeData, readVolumeParameters, readVoxelData, readVoxelDataIndividually, setVoxelRange

Methods inherited from class org.jmol.jvxl.readers.VoxelReader

addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, excludeMaximumSet, excludeMinimumSet, getCalcPoint, getColorIndexFromPalette, getColorPhaseIndex, getMaxMappedValue, getMinMappedValue, getSurfacePointIndex, gotoAndReadVoxelData, gotoData, initializeVolumetricData, isInside, jvxlUpdateInfo, readColorData, readSurfacePoint, resetIsosurface, selectPocket, setVolumeData, updateSurfaceData, updateTriangles

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

functionName

private java.lang.String functionName

data

private float[][] data

isPlanarMapping

private boolean isPlanarMapping

Constructor Detail

IsoFxyReader

IsoFxyReader(SurfaceGenerator sg)

Method Detail

setup

protected void setup()

Overrides:

setup in class VolumeDataReader

getValue

protected float getValue(int x,
                         int y,
                         int z)

Overrides:

getValue in class VolumeDataReader