org.jmol.adapter.smarter
Class SmarterJmolAdapter.AtomIterator

java.lang.Object
  org.jmol.api.JmolAdapter.AtomIterator
      org.jmol.adapter.smarter.SmarterJmolAdapter.AtomIterator

Enclosing class:

SmarterJmolAdapter

 class SmarterJmolAdapter.AtomIterator
extends JmolAdapter.AtomIterator

Field Summary

(package private) Atom	atom
(package private) int	atomCount
(package private) Atom[]	atoms
(package private) AtomSetCollection	atomSetCollection
(package private) int	iatom

Constructor Summary

SmarterJmolAdapter.AtomIterator(AtomSetCollection atomSetCollection)

Method Summary

char	getAlternateLocationID()
java.lang.String	getAtomName()
int	getAtomSerial()
int	getAtomSetIndex()
int	getAtomSite()
java.util.BitSet	getAtomSymmetry()
float	getBfactor()
char	getChainID()
int	getElementNumber()
java.lang.String	getElementSymbol()
java.lang.Object[]	getEllipsoid()
int	getFormalCharge()
java.lang.String	getGroup3()
char	getInsertionCode()
boolean	getIsHetero()
int	getOccupancy()
float	getPartialCharge()
float	getRadius()
int	getSequenceNumber()
java.lang.Object	getUniqueID()
float	getVectorX()
float	getVectorY()
float	getVectorZ()
float	getX()
float	getY()
float	getZ()
boolean	hasNext()

Methods inherited from class org.jmol.api.JmolAdapter.AtomIterator

getClientAtomReference

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

atomSetCollection

AtomSetCollection atomSetCollection

iatom

int iatom

atom

Atom atom

atomCount

int atomCount

atoms

Atom[] atoms

Constructor Detail

SmarterJmolAdapter.AtomIterator

SmarterJmolAdapter.AtomIterator(AtomSetCollection atomSetCollection)

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in class JmolAdapter.AtomIterator

getAtomSetIndex

public int getAtomSetIndex()

Overrides:

getAtomSetIndex in class JmolAdapter.AtomIterator

getAtomSymmetry

public java.util.BitSet getAtomSymmetry()

Overrides:

getAtomSymmetry in class JmolAdapter.AtomIterator

getAtomSite

public int getAtomSite()

Overrides:

getAtomSite in class JmolAdapter.AtomIterator

getUniqueID

public java.lang.Object getUniqueID()

Specified by:

getUniqueID in class JmolAdapter.AtomIterator

getElementSymbol

public java.lang.String getElementSymbol()

Overrides:

getElementSymbol in class JmolAdapter.AtomIterator

getElementNumber

public int getElementNumber()

Overrides:

getElementNumber in class JmolAdapter.AtomIterator

getAtomName

public java.lang.String getAtomName()

Overrides:

getAtomName in class JmolAdapter.AtomIterator

getFormalCharge

public int getFormalCharge()

Overrides:

getFormalCharge in class JmolAdapter.AtomIterator

getPartialCharge

public float getPartialCharge()

Overrides:

getPartialCharge in class JmolAdapter.AtomIterator

getEllipsoid

public java.lang.Object[] getEllipsoid()

Overrides:

getEllipsoid in class JmolAdapter.AtomIterator

getRadius

public float getRadius()

Overrides:

getRadius in class JmolAdapter.AtomIterator

getX

public float getX()

Specified by:

getX in class JmolAdapter.AtomIterator

getY

public float getY()

Specified by:

getY in class JmolAdapter.AtomIterator

getZ

public float getZ()

Specified by:

getZ in class JmolAdapter.AtomIterator

getVectorX

public float getVectorX()

Overrides:

getVectorX in class JmolAdapter.AtomIterator

getVectorY

public float getVectorY()

Overrides:

getVectorY in class JmolAdapter.AtomIterator

getVectorZ

public float getVectorZ()

Overrides:

getVectorZ in class JmolAdapter.AtomIterator

getBfactor

public float getBfactor()

Overrides:

getBfactor in class JmolAdapter.AtomIterator

getOccupancy

public int getOccupancy()

Overrides:

getOccupancy in class JmolAdapter.AtomIterator

getIsHetero

public boolean getIsHetero()

Overrides:

getIsHetero in class JmolAdapter.AtomIterator

getAtomSerial

public int getAtomSerial()

Overrides:

getAtomSerial in class JmolAdapter.AtomIterator

getChainID

public char getChainID()

Overrides:

getChainID in class JmolAdapter.AtomIterator

getAlternateLocationID

public char getAlternateLocationID()

Overrides:

getAlternateLocationID in class JmolAdapter.AtomIterator

getGroup3

public java.lang.String getGroup3()

Overrides:

getGroup3 in class JmolAdapter.AtomIterator

getSequenceNumber

public int getSequenceNumber()

Overrides:

getSequenceNumber in class JmolAdapter.AtomIterator

getInsertionCode

public char getInsertionCode()

Overrides:

getInsertionCode in class JmolAdapter.AtomIterator