org.jmol.adapter.readers.more
Class SpartanSmolReader

java.lang.Object
  org.jmol.adapter.smarter.AtomSetCollectionReader
      org.jmol.adapter.readers.more.SpartanSmolReader

public class SpartanSmolReader
extends AtomSetCollectionReader

Field Summary

private int	atomCount
private java.lang.String	endCheck
private boolean	isCompoundDocument
private boolean	isDirectory
private boolean	isZipFile
private java.util.Hashtable	moData
private java.lang.String	modelName

Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, desiredModelNumber, desiredSpaceGroupIndex, doApplySymmetry, filter, getHeader, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveDesiredModel, iHaveSymmetryOperators, iHaveUnitCell, latticeCells, line, modelNumber, needToApplySymmetry, next, notionalUnitCell, prevline, primitiveLatticeVectors, ptLine, reader, readerName, spaceGroup

Constructor Summary

SpartanSmolReader()

Method Summary

(package private) void	readArchiveHeader()
AtomSetCollection	readAtomSetCollection(java.io.BufferedReader reader)

Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

addJmolScript, addPrimitiveLatticeVector, addSites, applySymmetry, checkLineForScript, checkLineForScript, clearLatticeParameters, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, fillDataBlock, filterAtom, getElementSymbol, getStrings, getTokens, getTokens, getTokens, getTokensFloat, initialize, initialize, initializeCartesianToFractional, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readAtomSetCollectionFromDOM, readLine, readLineTrimmed, setAtomCoord, setAtomCoord, setError, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setUnitCell, setUnitCellItem

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

isCompoundDocument

private boolean isCompoundDocument

isZipFile

private boolean isZipFile

isDirectory

private boolean isDirectory

endCheck

private java.lang.String endCheck

modelName

private java.lang.String modelName

atomCount

private int atomCount

moData

private java.util.Hashtable moData

Constructor Detail

SpartanSmolReader

public SpartanSmolReader()

Method Detail

readAtomSetCollection

public AtomSetCollection readAtomSetCollection(java.io.BufferedReader reader)

Specified by:

readAtomSetCollection in class AtomSetCollectionReader

readArchiveHeader

void readArchiveHeader()
                 throws java.lang.Exception

Throws:

java.lang.Exception