org.jmol.adapter.readers.more
Class OdysseyXMLReader

java.lang.Object
  org.jmol.adapter.smarter.AtomSetCollectionReader
      org.jmol.adapter.readers.more.OdysseyXMLReader

public class OdysseyXMLReader
extends AtomSetCollectionReader

Field Summary

(package private) int	atomCount
(package private) int	bondCount
(package private) java.lang.String	modelName

Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, desiredModelNumber, desiredSpaceGroupIndex, doApplySymmetry, filter, getHeader, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveDesiredModel, iHaveSymmetryOperators, iHaveUnitCell, latticeCells, line, modelNumber, needToApplySymmetry, next, notionalUnitCell, prevline, primitiveLatticeVectors, ptLine, reader, readerName, spaceGroup

Constructor Summary

OdysseyXMLReader()

Method Summary

(package private) void	readAtoms()
AtomSetCollection	readAtomSetCollection(java.io.BufferedReader reader)
(package private) void	readBonds()
(package private) void	readDescription()
(package private) java.util.Hashtable	readXML(java.lang.String name)

Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader

addJmolScript, addPrimitiveLatticeVector, addSites, applySymmetry, checkLineForScript, checkLineForScript, clearLatticeParameters, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, fillDataBlock, filterAtom, getElementSymbol, getStrings, getTokens, getTokens, getTokens, getTokensFloat, initialize, initialize, initializeCartesianToFractional, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readAtomSetCollectionFromDOM, readLine, readLineTrimmed, setAtomCoord, setAtomCoord, setError, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setUnitCell, setUnitCellItem

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

modelName

java.lang.String modelName

atomCount

int atomCount

bondCount

int bondCount

Constructor Detail

OdysseyXMLReader

public OdysseyXMLReader()

Method Detail

readAtomSetCollection

public AtomSetCollection readAtomSetCollection(java.io.BufferedReader reader)

Specified by:

readAtomSetCollection in class AtomSetCollectionReader

readDescription

void readDescription()
               throws java.lang.Exception

Throws:

java.lang.Exception

readAtoms

void readAtoms()
         throws java.lang.Exception

Throws:

java.lang.Exception

readXML

java.util.Hashtable readXML(java.lang.String name)
                      throws java.lang.Exception

Throws:

java.lang.Exception

readBonds

void readBonds()
         throws java.lang.Exception

Throws:

java.lang.Exception