org.openscience.jmol.app

Class Jmol

public class Jmol extends JPanel

Nested Class Summary
class	Jmol.AboutAction
static class	Jmol.ActionChangedListener
protected class	Jmol.AppCloser To shutdown when run as an application.
class	Jmol.AtomSetChooserAction
class	Jmol.CloseAction
static class	Jmol.ConsoleAction
class	Jmol.CopyImageAction An Action to copy the current image into the clipboard.
class	Jmol.CopyScriptAction
class	Jmol.ExecuteScriptAction
class	Jmol.ExitAction Really lame implementation of an exit command
class	Jmol.ExportAction
class	Jmol.MyStatusListener
class	Jmol.NewAction
class	Jmol.NewwinAction
class	Jmol.OpenAction
class	Jmol.OpenUrlAction
class	Jmol.PasteClipboardAction
class	Jmol.PovrayAction
class	Jmol.PrintAction
class	Jmol.RecentFilesAction
class	Jmol.ScriptWindowAction
class	Jmol.ToWebAction
class	Jmol.UguideAction
class	Jmol.ViewMeasurementTableAction
class	Jmol.WhatsNewAction
class	Jmol.WriteAction

Field Summary
static String	aboutAction
String	appletContext
static String	atomsetchooserAction
AtomSetChooser	atomSetChooser
static Point	border
static AbstractButton	buttonRotate Button group for toggle buttons in the toolbar.
static String	chemFileProperty
static String	closeAction
Hashtable	commands
static JFrame	consoleframe
Jmol.CopyImageAction	copyImageAction
static String	copyImageActionProperty
Jmol.CopyScriptAction	copyScriptAction
static String	copyScriptActionProperty
static String	CONSOLE_WINDOW_NAME
Action[]	defaultActions Actions defined by the Jmol class
DisplayPanel	display
Jmol.ExecuteScriptAction	executeScriptAction
static String	exitAction
Jmol.ExportAction	exportAction
static String	exportActionProperty
protected JFrame	frame
static String	FILE_OPEN_WINDOW_NAME
GuiMap	guimap
static Boolean	haveBorder
static Boolean	haveConsole
static Boolean	haveDisplay
static HistoryFile	historyFile
static String[]	imageChoices
static String[]	imageExtensions
String	imageType
static Boolean	isSilent
JmolPopup	jmolpopup
static String	JMOL_WINDOW_NAME
String	language
MeasurementTable	measurementTable
JMenuBar	menubar
static String	menuFile
Hashtable	menuItems
static String	menuStructure
JmolAdapter	modelAdapter
static String	newAction
static String	newwinAction
static int	numWindows
static String	openAction
static String	openurlAction
Jmol.PasteClipboardAction	pasteClipboardAction
static String	pasteClipboardActionProperty
PropertyChangeSupport	pcs
Jmol.PovrayAction	povrayAction
static String	povrayActionProperty
PreferencesDialog	preferencesDialog
Jmol.PrintAction	printAction
static String	printActionProperty
int	qualityJPG
int	qualityPNG
RecentFilesDialog	recentFiles
static String	recentFilesAction
static Dimension	screenSize
static String	scriptAction
ScriptWindow	scriptWindow
Splash	splash
int	startupHeight
int	startupWidth
StatusBar	status
static String	SCRIPT_WINDOW_NAME
JToolBar	toolbar
static ButtonGroup	toolbarButtonGroup
Jmol.ToWebAction	toWebAction
static String	toWebActionProperty
static String	uguideAction
static File	UserPropsFile
JmolViewer	viewer The data model.
Jmol.ViewMeasurementTableAction	viewMeasurementTableAction
WebExport	webExport
static String	whatsnewAction
Jmol.WriteAction	writeAction
static String	writeActionProperty
static String	WEB_MAKER_WINDOW_NAME

Constructor Summary
	Jmol(Splash splash, JFrame frame, Jmol parent, int startupWidth, int startupHeight, String commandOptions)
	Jmol(Splash splash, JFrame frame, Jmol parent, int startupWidth, int startupHeight, String commandOptions, Point loc)

Method Summary
protected void	addHelpMenuBar(JMenuBar menuBar)
protected void	addMacrosMenuBar(JMenuBar menuBar)
protected void	addNormalMenuBar(JMenuBar menuBar)
String	createImageStatus(String fileName, String type, Object text_or_bytes, int quality)
protected JMenu	createMenu(String key) Create a menu for the app.
protected JMenuBar	createMenubar() Create the menubar for the app.
protected JMenuItem	createMenuItem(String cmd) This is the hook through which all menu items are created.
protected Component	createStatusBar()
protected Component	createTool(String key) Hook through which every toolbar item is created.
Component	createToolbar() Create the toolbar.
protected AbstractButton	createToolbarButton(String key) Create a button to go inside of the toolbar.
void	dispose(JFrame f)
void	doClose()
protected Action	getAction(String cmd) Fetch the action that was created for the given command.
Action[]	getActions()
protected Frame	getFrame()
static HistoryFile	getHistoryFile()
static Jmol	getJmol(JFrame frame, int startupWidth, int startupHeight, String commandOptions)
protected JMenuItem	getMenuItem(String cmd) Fetch the menu item that was created for the given command.
String	getOpenFileNameFromDialog(String fileName)
static File	getUserDirectory() Returns a new File referenced by the property 'user.dir', or null if the property is not defined.
static void	main(String[] args)
void	print() added print command, so that it can be used by RasmolScriptHandler
static void	report(String str)
void	say(String message)
static void	setRotateButton()
protected void	setupNewFrame(String state)
protected String[]	tokenize(String input) Take the given string and chop it up into a series of strings on whitespace boundries.

Field Detail

atomsetchooserAction

private static final String atomsetchooserAction

buttonRotate

static AbstractButton buttonRotate

Button group for toggle buttons in the toolbar.

chemFileProperty

public static final String chemFileProperty

copyImageAction

private Jmol.CopyImageAction copyImageAction

copyImageActionProperty

private static final String copyImageActionProperty

copyScriptAction

private Jmol.CopyScriptAction copyScriptAction

copyScriptActionProperty

private static final String copyScriptActionProperty

CONSOLE_WINDOW_NAME

private static final String CONSOLE_WINDOW_NAME

defaultActions

private Action[] defaultActions

Actions defined by the Jmol class

executeScriptAction

private Jmol.ExecuteScriptAction executeScriptAction

exportActionProperty

private static final String exportActionProperty

FILE_OPEN_WINDOW_NAME

private static final String FILE_OPEN_WINDOW_NAME

JMOL_WINDOW_NAME

private static final String JMOL_WINDOW_NAME

newwinAction

private static final String newwinAction

openurlAction

private static final String openurlAction

pasteClipboardAction

private Jmol.PasteClipboardAction pasteClipboardAction

pasteClipboardActionProperty

private static final String pasteClipboardActionProperty

povrayActionProperty

private static final String povrayActionProperty

preferencesDialog

private PreferencesDialog preferencesDialog

printActionProperty

private static final String printActionProperty

recentFilesAction

private static final String recentFilesAction

scriptAction

private static final String scriptAction

SCRIPT_WINDOW_NAME

private static final String SCRIPT_WINDOW_NAME

toWebActionProperty

private static final String toWebActionProperty

uguideAction

private static final String uguideAction

viewMeasurementTableAction

private Jmol.ViewMeasurementTableAction viewMeasurementTableAction

whatsnewAction

private static final String whatsnewAction

writeActionProperty

private static final String writeActionProperty

WEB_MAKER_WINDOW_NAME

private static final String WEB_MAKER_WINDOW_NAME

Constructor Detail

Jmol

Jmol(Splash splash, JFrame frame, Jmol parent, int startupWidth, int startupHeight, String commandOptions)

Jmol

Jmol(Splash splash, JFrame frame, Jmol parent, int startupWidth, int startupHeight, String commandOptions, Point loc)

Method Detail

addHelpMenuBar

protected void addHelpMenuBar(JMenuBar menuBar)

addMacrosMenuBar

protected void addMacrosMenuBar(JMenuBar menuBar)

addNormalMenuBar

protected void addNormalMenuBar(JMenuBar menuBar)

createImageStatus

String createImageStatus(String fileName, String type, Object text_or_bytes, int quality)

createMenu

protected JMenu createMenu(String key)

Create a menu for the app. By default this pulls the definition of the menu from the associated resource file.

Parameters: key

Returns: Menu created

createMenubar

protected JMenuBar createMenubar()

Create the menubar for the app. By default this pulls the definition of the menu from the associated resource file.

Returns: Menubar

createMenuItem

protected JMenuItem createMenuItem(String cmd)

This is the hook through which all menu items are created. It registers the result with the menuitem hashtable so that it can be fetched with getMenuItem().

Parameters: cmd

Returns: Menu item created

createTool

protected Component createTool(String key)

Hook through which every toolbar item is created.

Parameters: key

Returns: Toolbar item

createToolbar

private Component createToolbar()

Create the toolbar. By default this reads the resource file for the definition of the toolbars.

Returns: The toolbar

createToolbarButton

protected AbstractButton createToolbarButton(String key)

Create a button to go inside of the toolbar. By default this will load an image resource. The image filename is relative to the classpath (including the '.' directory if its a part of the classpath), and may either be in a JAR file or a separate file.

Parameters: key The key in the resource file to serve as the basis of lookups.

Returns: Button