org.openscience.jmol.app

Class AtomSetChooser

public class AtomSetChooser extends JFrame implements TreeSelectionListener, PropertyChangeListener, ActionListener, ChangeListener, Runnable

A JFrame that allows for choosing an Atomset to view.

Author: René Kanters, University of Richmond

Nested Class Summary
static class	AtomSetChooser.AtomSet Objects in the AtomSetChooser tree

Field Summary
static float	AMPLITUDE_MAX Maximum value for vibration scale.
static float	AMPLITUDE_PRECISION Precision of the vibration scale slider
static float	AMPLITUDE_VALUE Initial value of vibration scale.
JSlider	amplitudeSlider
Thread	animThread
int	currentIndex
static String	COLLECTION String for prefix/resource identifier for the collection area.
JSlider	fpsSlider
static String	FF
static int	FPS_MAX Maximum value for the fps slider.
int[]	indexes Sequence of atom set indexes in current tree selection for a branch, or siblings for a leaf.
JLabel	infoLabel
static String	NEXT
JSlider	periodSlider
JTextArea	propertiesTextArea
static String	PAUSE
static float	PERIOD_MAX Maximum value for the vibration period in seconds.
static float	PERIOD_PRECISION Precision of the vibration period slider in seconds.
static float	PERIOD_VALUE Initial value for the vibration period in seconds.
static String	PLAY
static String	PREVIOUS
JSlider	radiusSlider
JCheckBox	repeatCheckBox
static int	RADIUS_MAX Maximum value for vector radius.
static int	RADIUS_VALUE Initial value of vector radius.
static String	REWIND
JFileChooser	saveChooser
JSlider	scaleSlider
JSlider	selectSlider
static String	SAVE
static float	SCALE_MAX Maximum value for vector scale.
static float	SCALE_PRECISION Precision of the vector scale slider
static float	SCALE_VALUE Initial value of vector scale.
JTree	tree
DefaultTreeModel	treeModel
JmolViewer	viewer
static String	VECTOR String for prefix/resource identifier for the vector area.

Constructor Summary
	AtomSetChooser(JmolViewer viewer, JFrame frame)

Method Summary
void	actionPerformed(ActionEvent e)
void	createTreeModel() Creates the treeModel of the AtomSets available in the JmolViewer
JPanel	createVCRController(String section) Creates a VCR type set of controller inside a JPanel.
void	findFrequency(int index, int increment) Have the viewer show a particular frame with frequencies if it can be found.
void	layoutWindow(Container container)
void	propertyChange(PropertyChangeEvent propertyChangeEvent)
void	run()
void	saveXYZCollection() Saves the currently active collection as a multistep XYZ file.
protected void	setIndexes(DefaultMutableTreeNode node) Sets the indexes to the atomSetIndex values of each leaf of the node.
protected void	showAtomSetIndex(int index, boolean bSetSelectSlider) Show an atom set from the indexes array
protected void	showAuxiliaryInfo(Hashtable auxiliaryInfo) Shows the auxiliary information in the propertiesPane of the AtomSetChooser window
protected void	showProperties(Properties properties) Shows the properties in the propertiesPane of the AtomSetChooser window
void	stateChanged(ChangeEvent e)
void	valueChanged(TreeSelectionEvent e)

Field Detail

AMPLITUDE_MAX

private static final float AMPLITUDE_MAX

Maximum value for vibration scale. Should be in preferences?

AMPLITUDE_PRECISION

private static final float AMPLITUDE_PRECISION

Precision of the vibration scale slider

AMPLITUDE_VALUE

private static final float AMPLITUDE_VALUE

Initial value of vibration scale. Should be in preferences?

amplitudeSlider

private JSlider amplitudeSlider

animThread

private Thread animThread

currentIndex

private int currentIndex

COLLECTION

static final String COLLECTION

String for prefix/resource identifier for the collection area. This value is used in the Jmol properties files.

fpsSlider

private JSlider fpsSlider

FF

static final String FF

FPS_MAX

private static final int FPS_MAX

Maximum value for the fps slider.

indexes

private int[] indexes

Sequence of atom set indexes in current tree selection for a branch, or siblings for a leaf.

infoLabel

private JLabel infoLabel

static final String NEXT

periodSlider

private JSlider periodSlider

propertiesTextArea

private JTextArea propertiesTextArea

PAUSE

static final String PAUSE

PERIOD_MAX

private static final float PERIOD_MAX

Maximum value for the vibration period in seconds. Should be in preferences?

PERIOD_PRECISION

private static final float PERIOD_PRECISION

Precision of the vibration period slider in seconds.

PERIOD_VALUE

private static final float PERIOD_VALUE

Initial value for the vibration period in seconds. Should be in preferences?

PLAY

static final String PLAY

static final String PREVIOUS

radiusSlider

private JSlider radiusSlider

repeatCheckBox

private JCheckBox repeatCheckBox

RADIUS_MAX

private static final int RADIUS_MAX

Maximum value for vector radius.

RADIUS_VALUE

private static final int RADIUS_VALUE

Initial value of vector radius. Should be in preferences?

REWIND

static final String REWIND

saveChooser

private JFileChooser saveChooser

scaleSlider

private JSlider scaleSlider

selectSlider

private JSlider selectSlider

SAVE

static final String SAVE

SCALE_MAX

private static final float SCALE_MAX

Maximum value for vector scale. Should be in preferences?

SCALE_PRECISION

private static final float SCALE_PRECISION

Precision of the vector scale slider

SCALE_VALUE

private static final float SCALE_VALUE

Initial value of vector scale. Should be in preferences?

tree

private JTree tree

treeModel

private DefaultTreeModel treeModel

viewer

private JmolViewer viewer

VECTOR

static final String VECTOR

String for prefix/resource identifier for the vector area. This value is used in the Jmol properties files.

Constructor Detail

AtomSetChooser

public AtomSetChooser(JmolViewer viewer, JFrame frame)

Method Detail

actionPerformed

public void actionPerformed(ActionEvent e)

createTreeModel

private void createTreeModel()

Creates the treeModel of the AtomSets available in the JmolViewer

createVCRController

private JPanel createVCRController(String section)

Creates a VCR type set of controller inside a JPanel.

Uses the JmolResourceHandler to get the label for the panel, the images for the buttons, and the tooltips. The button names are rewind, prev, play, pause, next, and ff.

The handler for the buttons should determine from the getActionCommand which button in which section triggered the actionEvent, which is identified by {section}.{name}.

Parameters: section String of the section that the controller belongs to.

Returns: The JPanel