org.jmol.shapebio

Class BioShapeCollection

public abstract class BioShapeCollection extends Shape

Mps stands for Model-Polymer-Shape When a Cartoon is instantiated with a call to setSize(), it creates an MpsShape for each BioPolymer in the model set. It is these shapes that are the real "shapes". Unlike other shapes, which are indexed by atom and throughout the entire model set, these shapes are indexed by residue and are restricted to a given BioPolymer within a given Model. Model

Field Summary
Atom[]	atoms
BioShape[]	bioShapes
boolean	isActive
short	madDnaRna
short	madHelixSheet
short	madOn
short	madTurnRandom

Method Summary
void	findNearestAtomIndex(int xMouse, int yMouse, Atom[] closest)
BioShape	getBioShape(int i)
int	getMpsShapeCount()
String	getShapeState()
void	initialize()
void	initModelSet()
void	setModelClickability()
void	setProperty(String propertyName, Object value, BitSet bsSelected)
void	setSize(int size, BitSet bsSelected)
void	setVisibilityFlags(BitSet bs)