org.jmol.modelsetbio
public class AlphaMonomer extends Monomer
| Field Summary | |
|---|---|
| static byte[] | alphaOffsets |
| protected Point3f | nitrogenHydrogenPoint |
| ProteinStructure | proteinStructure |
| Constructor Summary | |
|---|---|
| AlphaMonomer(Chain chain, String group3, int seqcode, int firstAtomIndex, int lastAtomIndex, byte[] offsets) | |
| Method Summary | |
|---|---|
| Atom | getAtom(byte specialAtomID) |
| Point3f | getAtomPoint(byte specialAtomID) |
| ProteinStructure | getProteinStructure() |
| int | getProteinStructureID() |
| byte | getProteinStructureType() |
| Object | getStructure() |
| boolean | isAlphaMonomer() |
| boolean | isConnectedAfter(Monomer possiblyPreviousMonomer) |
| boolean | isHelix() |
| boolean | isSheet() |
| int | setProteinStructureType(byte iType, int monomerIndexCurrent) |
| void | setStructure(ProteinStructure proteinStructure) |
| static Monomer | validateAndAllocate(Chain chain, String group3, int seqcode, int firstIndex, int lastIndex, int[] specialAtomIndexes, Atom[] atoms) |
Parameters: iType monomerIndexCurrent a pointer to the current ProteinStructure
Returns: a pointer to this ProteinStructure