org.jmol.modelset
public final class Chain extends Object
| Field Summary | |
|---|---|
| BitSet | bsSelectedGroups |
| char | chainID |
| int | groupCount |
| Group[] | groups |
| boolean | isDna |
| boolean | isRna |
| Model | model |
| ModelSet | modelSet |
| int | selectedGroupCount |
| Constructor Summary | |
|---|---|
| Chain(ModelSet modelSet, Model model, char chainID) | |
| Method Summary | |
|---|---|
| void | calcSelectedGroupsCount(BitSet bsSelected)
prior to coloring by group, we need the chain count per chain
that is selected
|
| void | fixIndices(int atomsDeleted) |
| Atom | getAtom(int index) |
| int | getAtomCount() |
| char | getChainID() |
| Group | getGroup(int groupIndex) |
| int | getGroupCount() |
| ModelSet | getModelSet() |
| int | getSelectedGroupCount() |
| boolean | isDna() |
| boolean | isRna() |
| int | selectSeqcodeRange(int index0, int seqcodeA, int seqcodeB, BitSet bs) |
| void | setIsDna(boolean TF) |
| void | setIsRna(boolean TF) |
| void | setModelSet(ModelSet modelSet) |
| void | updateOffsetsForAlternativeLocations(BitSet bsSelected, int nAltLocInModel, byte[] offsets, int firstAtomIndex, int lastAtomIndex) |
Parameters: bsSelected