org.jmol.modelset

Class AtomIteratorWithinSet

class AtomIteratorWithinSet extends Object implements AtomIndexIterator

Field Summary
int	atomIndex
CubeIterator	bsptIter
BitSet	bsSelected
int	iNext
boolean	isGreaterOnly
int	zerobase

Method Summary
float	foundDistance2()
boolean	hasNext()
void	initialize(Bspf bspf, int bsptIndex, int atomIndex, Point3f center, float distance, BitSet bsSelected, boolean isGreaterOnly, int zerobase) a more powerful iterator than AtomIteratorWithinModel allowing excluding a specific atom, finding only those atoms with an atom index greater than that specified or atoms within a specific selected subset of atoms.
int	next()
void	release()

Field Detail

Method Detail

initialize

void initialize(Bspf bspf, int bsptIndex, int atomIndex, Point3f center, float distance, BitSet bsSelected, boolean isGreaterOnly, int zerobase)

a more powerful iterator than AtomIteratorWithinModel allowing excluding a specific atom, finding only those atoms with an atom index greater than that specified or atoms within a specific selected subset of atoms. Returns atoms within a cube centered on the point Does NOT return i == atomIndex

Parameters: bspf bsptIndex atomIndex center distance bsSelected isGreaterOnly zerobase

public int next()

release

public void release()