org.jmol.api

Interface JmolBioResolver

public interface JmolBioResolver

Method Summary
Polymer	buildBioPolymer(Group group, Group[] groups, int i, boolean checkPolymerConnections)
void	clearBioPolymers(Group[] groups, int groupCount, BitSet alreadyDefined)
Group	distinguishAndPropagateGroup(Chain chain, String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, byte[] specialAtomIDs, Atom[] atoms)

Method Detail

buildBioPolymer

public Polymer buildBioPolymer(Group group, Group[] groups, int i, boolean checkPolymerConnections)

clearBioPolymers

public void clearBioPolymers(Group[] groups, int groupCount, BitSet alreadyDefined)

distinguishAndPropagateGroup

public Group distinguishAndPropagateGroup(Chain chain, String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, byte[] specialAtomIDs, Atom[] atoms)